ARC Centre of Excellence for Plant Energy Biology

MPIC — TIM21,TIM21-LIKE-1,TIM21-LIKE-2 Transmembrane Helix Domain Predictions

Num_PredHel indicates the number of predicted transmembrane helix domains calculated by DAS and TMHMM predictors (for methods, see MPIC paper). A tally of both predictors is shown first.

Num_PredHel Frequency
1 45
2 52
3 2
4 1

2 predicted Species DAS_Num_PredHelTMHMM_Num_PredHel
AT2G40800 Species Arabidopsis thaliana Arabidopsis thaliana 22
AT3G56430 Species Arabidopsis thaliana Arabidopsis thaliana 22
AT4G00026 Species Arabidopsis thaliana Arabidopsis thaliana 11
Bra004587 Species Brassica rapa Brassica rapa 22
Bra007092 Species Brassica rapa Brassica rapa 1
Bra007246 Species Brassica rapa Brassica rapa 22
Bra016969 Species Brassica rapa Brassica rapa
Bra037306 Species Brassica rapa Brassica rapa 1
gi|351063723 Species Caenorhabditis elegans Caenorhabditis elegans 11
Cre09.g405550.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii 11
g5121.t1 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii 23
Carubv10001670m.g Species Capsella rubella Capsella rubella 11
Carubv10017250m.g Species Capsella rubella Capsella rubella 22
Carubv10023715m.g Species Capsella rubella Capsella rubella 22
Carubv10024489m.g Species Capsella rubella Capsella rubella
Cucsa.237950.1 Species Cucumis sativus Cucumis sativus 22
Cucsa.364430.1 Species Cucumis sativus Cucumis sativus 11
Eucgr.D01510.1 Species Eucalyptus grandis Eucalyptus grandis 21
Eucgr.G03152.1 Species Eucalyptus grandis Eucalyptus grandis 22
Eucgr.G03162.1 Species Eucalyptus grandis Eucalyptus grandis 22
Eucgr.L02349.1 Species Eucalyptus grandis Eucalyptus grandis 22
Esi_0103_0070 Species Ectocarpus siliculosus Ectocarpus siliculosus 11
Glyma04g40191.1 Species Glycine max Glycine max 22
Glyma06g14620.1 Species Glycine max Glycine max 22
Glyma06g38190.1 Species Glycine max Glycine max
Glyma08g37602.1 Species Glycine max Glycine max
Glyma10g31810.2 Species Glycine max Glycine max 11
gi|156142176 Species Homo sapiens Homo sapiens 11
medicago tim21-like|Mtr.10944.1.S1_at Species Medicago truncatula Medicago truncatula 22
contig_129437:1..1349|Tim21_medicago Species Medicago truncatula Medicago truncatula 11
gi|85105583|ref|XP_961997.1 Species Neurospora crassa Neurospora crassa 11
LOC_Os01g07382.1 Species Oryza sativa Oryza sativa 22
LOC_Os03g14890.1 Species Oryza sativa Oryza sativa 11
Phpat.001G020700.1 Species Physcomitrella patens Physcomitrella patens 22
Phpat.002G071500.1 Species Physcomitrella patens Physcomitrella patens 11
Phpat.007G071600.1 Species Physcomitrella patens Physcomitrella patens 22
Potri.002G140700.1 Species Populus trichocarpa Populus trichocarpa 11
Potri.014G054400.1 Species Populus trichocarpa Populus trichocarpa 11
Potri.019G062200.1 Species Populus trichocarpa Populus trichocarpa 23
29729.m002393|29729.t000126 Species Ricinus communis Ricinus communis 22
30174.m008783|30174.t000180 Species Ricinus communis Ricinus communis 11
YGR033C Species Saccharomyces cerevisiae Saccharomyces cerevisiae 11
111521 Species Selaginella moellendorffii Selaginella moellendorffii 11
112658 Species Selaginella moellendorffii Selaginella moellendorffii 22
65001 Species Selaginella moellendorffii Selaginella moellendorffii 22
65904 Species Selaginella moellendorffii Selaginella moellendorffii 22
78719 Species Selaginella moellendorffii Selaginella moellendorffii 22
PGSC0003DMG400005253|PGSC0003DMT400013467 Species Solanum tuberosum Solanum tuberosum 22
PGSC0003DMG401012327|PGSC0003DMT400032113 Species Solanum tuberosum Solanum tuberosum 11
Vocar20013604m.g Species Volvox carteri Volvox carteri 42
GSVIVG01022807001|GSVIVT01022807001 Species Vitis vinifera Vitis vinifera 11
GSVIVG01032862001|GSVIVT01032862001 Species Vitis vinifera Vitis vinifera 11
GRMZM2G061187_T01 Species Zea mays Zea mays 22
GRMZM2G174236_T01 Species Zea mays Zea mays 11
GRMZM2G459861_T01 Species Zea mays Zea mays 22

Sequences (FASTA)