ARC Centre of Excellence for Plant Energy Biology

MPIC — TIM21,TIM21-LIKE-1,TIM21-LIKE-2 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
cTP 34
mTP 33
SP 2

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

cTP predicted plus 2 others Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT2G40800 Species Arabidopsis thaliana Arabidopsis thaliana cTPmTP
AT3G56430 Species Arabidopsis thaliana Arabidopsis thaliana cTP
AT4G00026 Species Arabidopsis thaliana Arabidopsis thaliana cTPcTP
Bra004587 Species Brassica rapa Brassica rapa cTPcTP
Bra007092 Species Brassica rapa Brassica rapa cTPcTP
Bra007246 Species Brassica rapa Brassica rapa cTPmTP
Bra016969 Species Brassica rapa Brassica rapa mTP
Bra037306 Species Brassica rapa Brassica rapa cTPmTP
gi|351063723 Species Caenorhabditis elegans Caenorhabditis elegans
Cre09.g405550.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii mTP
g5121.t1 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii cTPcTP
Carubv10001670m.g Species Capsella rubella Capsella rubella cTPmTP
Carubv10017250m.g Species Capsella rubella Capsella rubella cTPmTP
Carubv10023715m.g Species Capsella rubella Capsella rubella cTP
Carubv10024489m.g Species Capsella rubella Capsella rubella SP
Cucsa.237950.1 Species Cucumis sativus Cucumis sativus mTP
Cucsa.364430.1 Species Cucumis sativus Cucumis sativus cTPmTP
Eucgr.D01510.1 Species Eucalyptus grandis Eucalyptus grandis cTPmTP
Eucgr.G03152.1 Species Eucalyptus grandis Eucalyptus grandis mTP
Eucgr.G03162.1 Species Eucalyptus grandis Eucalyptus grandis cTPmTP
Eucgr.L02349.1 Species Eucalyptus grandis Eucalyptus grandis cTPcTP
Esi_0103_0070 Species Ectocarpus siliculosus Ectocarpus siliculosus
Glyma04g40191.1 Species Glycine max Glycine max cTPmTP
Glyma06g14620.1 Species Glycine max Glycine max cTPmTP
Glyma06g38190.1 Species Glycine max Glycine max
Glyma08g37602.1 Species Glycine max Glycine max mTP
Glyma10g31810.2 Species Glycine max Glycine max cTPmTP
gi|156142176 Species Homo sapiens Homo sapiens
medicago tim21-like|Mtr.10944.1.S1_at Species Medicago truncatula Medicago truncatula mTP
contig_129437:1..1349|Tim21_medicago Species Medicago truncatula Medicago truncatula
gi|85105583|ref|XP_961997.1 Species Neurospora crassa Neurospora crassa
LOC_Os01g07382.1 Species Oryza sativa Oryza sativa cTPmTP
LOC_Os03g14890.1 Species Oryza sativa Oryza sativa mTP
Phpat.001G020700.1 Species Physcomitrella patens Physcomitrella patens mTP
Phpat.002G071500.1 Species Physcomitrella patens Physcomitrella patens mTP
Phpat.007G071600.1 Species Physcomitrella patens Physcomitrella patens mTP
Potri.002G140700.1 Species Populus trichocarpa Populus trichocarpa mTP
Potri.014G054400.1 Species Populus trichocarpa Populus trichocarpa cTPmTP
Potri.019G062200.1 Species Populus trichocarpa Populus trichocarpa cTPmTP
29729.m002393|29729.t000126 Species Ricinus communis Ricinus communis cTP
30174.m008783|30174.t000180 Species Ricinus communis Ricinus communis mTP
YGR033C Species Saccharomyces cerevisiae Saccharomyces cerevisiae
111521 Species Selaginella moellendorffii Selaginella moellendorffii
112658 Species Selaginella moellendorffii Selaginella moellendorffii
65001 Species Selaginella moellendorffii Selaginella moellendorffii mTP
65904 Species Selaginella moellendorffii Selaginella moellendorffii mTP
78719 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400005253|PGSC0003DMT400013467 Species Solanum tuberosum Solanum tuberosum cTPcTP
PGSC0003DMG401012327|PGSC0003DMT400032113 Species Solanum tuberosum Solanum tuberosum cTPcTP
Vocar20013604m.g Species Volvox carteri Volvox carteri mTP
GSVIVG01022807001|GSVIVT01022807001 Species Vitis vinifera Vitis vinifera cTPmTP
GSVIVG01032862001|GSVIVT01032862001 Species Vitis vinifera Vitis vinifera SP
GRMZM2G061187_T01 Species Zea mays Zea mays cTPmTP
GRMZM2G174236_T01 Species Zea mays Zea mays mTP
GRMZM2G459861_T01 Species Zea mays Zea mays cTPmTP

Sequences (FASTA)