ARC Centre of Excellence for Plant Energy Biology

MPIC — TIM21,TIM21-LIKE-1,TIM21-LIKE-2 CDD Results

Sequences for all species were analysed by CDD (Marchler-Bauer et al. 2011) using default settings. *Columns are described in the CDD documentation.

Domains Genes
TIM21 superfamily 39
TIM21 4
t_SNARE superfamily 1
Tubulin_C superfamily 1
SKIP_SNW superfamily 1
t_SNARE 1
SpoU_methylase superfamily 1
RNA_capsid superfamily 1
SOBP 1
DUF3812 superfamily 1
QueryHit typePSSM-IDFromToE-ValueBitscoreAccessionShort nameIncompleteSuperfamily
AT2G40800 Species Arabidopsis thalianasuperfamily1168782623150.0066827835.3447cl17958TIM21 superfamilyN -
AT3G56430 Species Arabidopsis thalianasuperfamily2515003924280.0014327237.6646cl03682SKIP_SNW superfamilyN -
AT3G56430 Species Arabidopsis thalianasuperfamily1168782963490.0019232937.2707cl17958TIM21 superfamilyN -
AT4G00026 Species Arabidopsis thalianasuperfamily1168781522535.86274e-1774.635cl17958TIM21 superfamily - -
Bra004587 Species Brassica rapasuperfamily1168782462990.0003700239.1967cl17958TIM21 superfamilyN -
Bra007092 Species Brassica rapasuperfamily1168781082352.78914e-1981.1834cl17958TIM21 superfamily - -
Bra007246 Species Brassica rapasuperfamily1168782543070.0055793635.7299cl17958TIM21 superfamilyN -
Bra037306 Species Brassica rapasuperfamily1168781582848.40836e-1980.413cl17958TIM21 superfamily - -
gi|351063723 Species Caenorhabditis elegansspecific116878732134.28154e-59184.802pfam08294TIM21 - cl17958
gi|351063723 Species Caenorhabditis eleganssuperfamily116878732134.28154e-59184.802cl17958TIM21 superfamily - -
Cre09.g405550.t1.2 Species Chlamydomonas reinhardtiisuperfamily1168781272522.26525e-1673.0942cl17958TIM21 superfamily - -
g5121.t1 Species Chlamydomonas reinhardtiisuperfamily1168782733891.37669e-0544.2042cl17958TIM21 superfamily - -
Carubv10001670m.g Species Capsella rubellasuperfamily1168781582622.23987e-1981.9538cl17958TIM21 superfamily - -
Carubv10017250m.g Species Capsella rubellasuperfamily1168782953480.0015098137.6559cl17958TIM21 superfamilyN -
Cucsa.237950.1 Species Cucumis sativussuperfamily2572753153760.0002670239.1913cl15073DUF3812 superfamilyN -
Cucsa.237950.1 Species Cucumis sativussuperfamily1168782633160.0068127535.3447cl17958TIM21 superfamilyN -
Cucsa.364430.1 Species Cucumis sativussuperfamily1168782063073.89524e-1673.4794cl17958TIM21 superfamily - -
Eucgr.D01510.1 Species Eucalyptus grandissuperfamily1168782463681.42141e-1366.931cl17958TIM21 superfamily - -
Eucgr.G03152.1 Species Eucalyptus grandissuperfamily1168782363413.81381e-0541.8931cl17958TIM21 superfamilyN -
Eucgr.L02349.1 Species Eucalyptus grandissuperfamily1168782013061.67163e-0543.0487cl17958TIM21 superfamilyN -
Esi_0103_0070 Species Ectocarpus siliculosussuperfamily116878481811.73606e-1158.4566cl17958TIM21 superfamily - -
Glyma04g40191.1 Species Glycine maxsuperfamily1168782192740.0026372536.5003cl17958TIM21 superfamilyN -
Glyma06g38190.1 Species Glycine maxsuperfamily266618231036.165e-1362.1416cl17307SpoU_methylase superfamilyN -
Glyma08g37602.1 Species Glycine maxsuperfamily26394738686.93192e-0947.5679cl10021Tubulin_C superfamilyN -
Glyma10g31810.2 Species Glycine maxsuperfamily1168781102241.82273e-1878.8722cl17958TIM21 superfamily - -
gi|156142176 Species Homo sapiensspecific1168781002443.14167e-58184.032pfam08294TIM21 - cl17958
gi|156142176 Species Homo sapienssuperfamily1168781002443.14167e-58184.032cl17958TIM21 superfamily - -
medicago tim21-like|Mtr.10944.1.S1_at Species Medicago truncatulamulti-dom25941224800.0069313534.7971pfam15279SOBPN -
gi|85105583|ref|XP_961997.1 Species Neurospora crassaspecific116878822296.62191e-66203.677pfam08294TIM21 - cl17958
gi|85105583|ref|XP_961997.1 Species Neurospora crassasuperfamily116878822296.62191e-66203.677cl17958TIM21 superfamily - -
LOC_Os03g14890.1 Species Oryza sativasuperfamily1168781272541.17278e-1982.339cl17958TIM21 superfamily - -
Phpat.001G020700.1 Species Physcomitrella patenssuperfamily1168782183225.55612e-0541.5079cl17958TIM21 superfamilyN -
Phpat.002G071500.1 Species Physcomitrella patenssuperfamily1168781772996.14118e-1672.709cl17958TIM21 superfamily - -
Phpat.007G071600.1 Species Physcomitrella patenssuperfamily1168782323360.0044016536.1151cl17958TIM21 superfamilyN -
Potri.002G140700.1 Species Populus trichocarpasuperfamily1168781852979.60843e-1671.9386cl17958TIM21 superfamily - -
Potri.014G054400.1 Species Populus trichocarpasuperfamily1168781602976.41391e-1569.6274cl17958TIM21 superfamily - -
Potri.019G062200.1 Species Populus trichocarpasuperfamily1168782633160.0012539537.6559cl17958TIM21 superfamilyN -
29729.m002393|29729.t000126 Species Ricinus communissuperfamily25168624830.0044893536.9593cl03850RNA_capsid superfamilyNC -
30174.m008783|30174.t000180 Species Ricinus communissuperfamily1168781643016.55924e-1569.6274cl17958TIM21 superfamily - -
YGR033C Species Saccharomyces cerevisiaespecific116878672196.91779e-74223.707pfam08294TIM21 - cl17958
YGR033C Species Saccharomyces cerevisiaesuperfamily116878672196.91779e-74223.707cl17958TIM21 superfamily - -
111521 Species Selaginella moellendorffiisuperfamily116878431551.54512e-1466.5458cl17958TIM21 superfamily - -
112658 Species Selaginella moellendorffiisuperfamily116878902226.59437e-0952.2934cl17958TIM21 superfamily - -
78719 Species Selaginella moellendorffiisuperfamily116878902211.7406e-0953.8342cl17958TIM21 superfamily - -
PGSC0003DMG401012327|PGSC0003DMT400032113 Species Solanum tuberosumsuperfamily116878901919.65018e-1670.783cl17958TIM21 superfamily - -
Vocar20013604m.g Species Volvox carterispecific23811541963.42582e-0541.7122cd00193t_SNARE - cl00152
Vocar20013604m.g Species Volvox carterisuperfamily26021941963.42582e-0541.7122cl00152t_SNARE superfamily - -
Vocar20013604m.g Species Volvox carterisuperfamily1168782423672.47212e-1573.0942cl17958TIM21 superfamily - -
GSVIVG01022807001|GSVIVT01022807001 Species Vitis viniferasuperfamily1168781762943.34575e-2290.043cl17958TIM21 superfamily - -
GRMZM2G061187_T01 Species Zea mayssuperfamily1168782402970.0053205435.7299cl17958TIM21 superfamilyN -
GRMZM2G174236_T01 Species Zea mayssuperfamily1168781202528.40751e-2288.5022cl17958TIM21 superfamily - -

Sequences (FASTA)