ARC Centre of Excellence for Plant Energy Biology

MPIC — TIM17 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
cTP 12
mTP 1
SP 1

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

cTP predicted plus 2 others Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT1G20350 Species Arabidopsis thaliana Arabidopsis thaliana
AT2G37410 Species Arabidopsis thaliana Arabidopsis thaliana
AT5G11690 Species Arabidopsis thaliana Arabidopsis thaliana
Bra005199 Species Brassica rapa Brassica rapa
Bra006109 Species Brassica rapa Brassica rapa
Bra016467 Species Brassica rapa Brassica rapa
Bra016468 Species Brassica rapa Brassica rapa
Bra016469 Species Brassica rapa Brassica rapa
Bra030980 Species Brassica rapa Brassica rapa
gi|17539600 Species Caenorhabditis elegans Caenorhabditis elegans cTP
gi|392899672 Species Caenorhabditis elegans Caenorhabditis elegans cTP
CMS471CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae cTP
Cre10.g452650.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii
Carubv10002239m.g Species Capsella rubella Capsella rubella
Carubv10010213m.g Species Capsella rubella Capsella rubella
Carubv10023975m.g Species Capsella rubella Capsella rubella
Cucsa.116650.1 Species Cucumis sativus Cucumis sativus
Cucsa.288810.1 Species Cucumis sativus Cucumis sativus
gi|66806813 Species Dictyostelium discoideum Dictyostelium discoideum cTP
Esi0117_0080 Species Ectocarpus siliculosus Ectocarpus siliculosus cTP
Glyma01g01110.1 Species Glycine max Glycine max
Glyma16g08520.2 Species Glycine max Glycine max
Glyma20g02120.1 Species Glycine max Glycine max
gi|269784613 Species Homo sapiens Homo sapiens cTP
gi|5454120 Species Homo sapiens Homo sapiens cTP
medicago|tim17 contig_66276:1037..2036- Species Medicago truncatula Medicago truncatula
gi|85095902 Species Neurospora crassa Neurospora crassa cTP
LOC_Os03g30200.1 Species Oryza sativa Oryza sativa
LOC_Os03g30220.1 Species Oryza sativa Oryza sativa mTP
LOC_Os05g07250.1 Species Oryza sativa Oryza sativa cTPcTPcTP
LOC_Os07g41330.1 Species Oryza sativa Oryza sativa
Phpat.019G021000.1 Species Physcomitrella patens Physcomitrella patens
Potri.006G165000.1 Species Populus trichocarpa Populus trichocarpa
Potri.008G176500.1 Species Populus trichocarpa Populus trichocarpa
Potri.018G087900.1 Species Populus trichocarpa Populus trichocarpa
29912.m005433|29912.t000159 Species Ricinus communis Ricinus communis
YJL143W Species Saccharomyces cerevisiae Saccharomyces cerevisiae cTP
89766 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400030451|PGSC0003DMT400078245 Species Solanum tuberosum Solanum tuberosum
Vocar20010628m.g Species Volvox carteri Volvox carteri
GSVIVG01015301001|GSVIVT01015301001 Species Vitis vinifera Vitis vinifera
GRMZM2G167463_T01 Species Zea mays Zea mays
GRMZM2G321404_T01 Species Zea mays Zea mays
GRMZM2G437270_T01 Species Zea mays Zea mays SP

Sequences (FASTA)