Computational targeting prediction programs were run en bloc for all included species using each algorithmâs default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).
| Prediction | Frequency |
|---|---|
| cTP | 6 |
| mTP | 1 |
| Perox | 1 |
cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway
| cTP predicted plus 2 others | Species | ChloroP | MitoProt2 | PProwler | Predotar | PTS1 | TargetP |
|---|---|---|---|---|---|---|---|
| AT1G61570 |
Arabidopsis thaliana | ||||||
| Bra003766 |
Brassica rapa | ||||||
| Bra015863 |
Brassica rapa | ||||||
| gi|17506427 |
Caenorhabditis elegans | cTP | |||||
| CMB148C |
Cyanidioschyzon merolae | cTP | |||||
| g15745.t1 |
Chlamydomonas reinhardtii | ||||||
| Carubv10021223 |
Capsella rubella | ||||||
| Cucsa.193350 |
Cucumis sativus | ||||||
| Eucgr.L00349 |
Eucalyptus grandis | ||||||
| Glyma08g48290 |
Glycine max | ||||||
| Glyma13g10250 |
Glycine max | ||||||
| gi|11024700 |
Homo sapiens | cTP | Perox | ||||
| Medtr3g080670 |
Medicago truncatula | ||||||
| gi|85104848 |
Neurospora crassa | cTP | |||||
| gi|85109802 |
Neurospora crassa | mTP | cTP | ||||
| LOC_Os02g45820 |
Oryza sativa | ||||||
| Phpat.025G038900 |
Physcomitrella patens | ||||||
| Potri.001G452100 |
Populus trichocarpa | ||||||
| Potri.011G149800 |
Populus trichocarpa | ||||||
| 30068.t000104 |
Ricinus communis | ||||||
| YGR181W |
Saccharomyces cerevisiae | cTP | |||||
| 228905 |
Selaginella moellendorffii | ||||||
| PGSC0003DMG400012109 |
Solanum tuberosum | ||||||
| Vocar20012438m |
Volvox carteri | ||||||
| GSVIVG01019698001 |
Vitis vinifera | ||||||
| GRMZM2G058432 |
Zea mays |