ARC Centre of Excellence for Plant Energy Biology

MPIC — TIM10 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
cTP 8
Perox 4

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

cTP predicted plus 1 other Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT2G29530 Species Arabidopsis thaliana Arabidopsis thaliana
Bra018381 Species Brassica rapa Brassica rapa cTP
Bra039986 Species Brassica rapa Brassica rapa
gi|17556370 Species Caenorhabditis elegans Caenorhabditis elegans cTP
CMG033CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae cTP
Cre12.g514900 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii
Carubv10024427 Species Capsella rubella Capsella rubella
Cucsa.146720 Species Cucumis sativus Cucumis sativus
Cucsa.207470 Species Cucumis sativus Cucumis sativus
gi|66811494 Species Dictyostelium discoideum Dictyostelium discoideum cTP
Eucgr.B02289 Species Eucalyptus grandis Eucalyptus grandis
Esi0041_0146 Species Ectocarpus siliculosus Ectocarpus siliculosus cTP
Glyma02g47850 Species Glycine max Glycine max
Glyma14g00770.1 Species Glycine max Glycine max
Glyma15g36821.1 Species Glycine max Glycine max
gi|6912708 Species Homo sapiens Homo sapiens cTP
Medtr2g097870 Species Medicago truncatula Medicago truncatula
gi|85114782 Species Neurospora crassa Neurospora crassa cTP
LOC_Os03g61019 Species Oryza sativa Oryza sativa Perox
LOC_Os07g13950 Species Oryza sativa Oryza sativa
Phpat.001G145200 Species Physcomitrella patens Physcomitrella patens
Potri.001G246500 Species Populus trichocarpa Populus trichocarpa
Potri.009G039600 Species Populus trichocarpa Populus trichocarpa
29751.t000033 Species Ricinus communis Ricinus communis
YHR005C-A Species Saccharomyces cerevisiae Saccharomyces cerevisiae cTPPerox
106093 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400020830 Species Solanum tuberosum Solanum tuberosum
PGSC0003DMG402020339 Species Solanum tuberosum Solanum tuberosum
VOLCADRAFT_120538 Species Volvox carteri Volvox carteri
GSVIVG01024832001 Species Vitis vinifera Vitis vinifera
GRMZM2G121743 Species Zea mays Zea mays Perox
GRMZM2G156848 Species Zea mays Zea mays Perox

Sequences (FASTA)