ARC Centre of Excellence for Plant Energy Biology

MPIC — SAM50 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
cTP 6
mTP 2
Perox 2

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

cTP predicted plus 2 others Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT3G11070 Species Arabidopsis thaliana Arabidopsis thaliana
AT5G05520 Species Arabidopsis thaliana Arabidopsis thaliana
Bra001389 Species Brassica rapa Brassica rapa
Bra009118 Species Brassica rapa Brassica rapa
Bra034868 Species Brassica rapa Brassica rapa
gi|17552460 Species Caenorhabditis elegans Caenorhabditis elegans cTP
CMO061CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae cTP
Cre06.g308900 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii
Carubv10000717 Species Capsella rubella Capsella rubella
Carubv10013427 Species Capsella rubella Capsella rubella
Cucsa.137480 Species Cucumis sativus Cucumis sativus
Eucgr.J00180 Species Eucalyptus grandis Eucalyptus grandis
Esi0503_0006 Species Ectocarpus siliculosus Ectocarpus siliculosus cTP
Glyma02g43160 Species Glycine max Glycine max
Glyma11g35531 Species Glycine max Glycine max
Glyma14g06250 Species Glycine max Glycine max
gi|225543166 Species Homo sapiens Homo sapiens cTP
Medtr3g071450 Species Medicago truncatula Medicago truncatula
Medtr5g083050 Species Medicago truncatula Medicago truncatula
gi|85098006 Species Neurospora crassa Neurospora crassa cTP
LOC_Os05g39390 Species Oryza sativa Oryza sativa
LOC_Os11g01490 Species Oryza sativa Oryza sativa
LOC_Os12g01500 Species Oryza sativa Oryza sativa
Phpat.023G045500 Species Physcomitrella patens Physcomitrella patens
Phpat.024G008700 Species Physcomitrella patens Physcomitrella patens
Potri.008G071800 Species Populus trichocarpa Populus trichocarpa
Potri.010G185600 Species Populus trichocarpa Populus trichocarpa
29814.t000035 Species Ricinus communis Ricinus communis
YNL026W Species Saccharomyces cerevisiae Saccharomyces cerevisiae cTP
139554 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400008029 Species Solanum tuberosum Solanum tuberosum Perox
Vocar20007806 Species Volvox carteri Volvox carteri Perox
GSVIVG01032775001 Species Vitis vinifera Vitis vinifera mTPmTP
AC197705.4_FG007 Species Zea mays Zea mays
GRMZM2G057557 Species Zea mays Zea mays
GRMZM2G062080 Species Zea mays Zea mays
GRMZM5G832582 Species Zea mays Zea mays

Sequences (FASTA)