ARC Centre of Excellence for Plant Energy Biology

MPIC — SAM37,SAM37-METAXIN Transmembrane Helix Domain Predictions

Num_PredHel indicates the number of predicted transmembrane helix domains calculated by DAS and TMHMM predictors (for methods, see MPIC paper). A tally of both predictors is shown first.

Num_PredHel Frequency
1 23
2 21
3 8
4 2

1 predicted Species DAS_Num_PredHelTMHMM_Num_PredHel
AT2G19080 Species Arabidopsis thaliana Arabidopsis thaliana 21
Bra038562 Species Brassica rapa Brassica rapa 21
Bra038838 Species Brassica rapa Brassica rapa 11
gi|17507265 Species Caenorhabditis elegans Caenorhabditis elegans 2
gi|392895600 Species Caenorhabditis elegans Caenorhabditis elegans
A8IDQ8_CHLRE|tr Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii 3
Carubv10013910 Species Capsella rubella Capsella rubella 3
Cucsa.081250 Species Cucumis sativus Cucumis sativus 2
Eucgr.C00132 Species Eucalyptus grandis Eucalyptus grandis 2
Eucgr.C00132.1 Species Eucalyptus grandis Eucalyptus grandis 2
Esi0338_0018 Species Ectocarpus siliculosus Ectocarpus siliculosus 2
Glyma09g06470 Species Glycine max Glycine max 21
Glyma13g00660 Species Glycine max Glycine max 21
Glyma15g17695 Species Glycine max Glycine max 21
Glyma17g06820 Species Glycine max Glycine max 21
gi|119616246 Species Homo sapiens Homo sapiens
gi|1326108 Species Homo sapiens Homo sapiens 1
gi|56789715 Species Homo sapiens Homo sapiens
Medtr2g036910 Species Medicago truncatula Medicago truncatula 21
Medtr4g127630 Species Medicago truncatula Medicago truncatula 21
gi|85114751 Species Neurospora crassa Neurospora crassa 32
LOC_Os06g07160.1 Species Oryza sativa Oryza sativa 31
Phpat.004G037800 Species Physcomitrella patens Physcomitrella patens 32
Phpat.012G046000 Species Physcomitrella patens Physcomitrella patens 21
Potri.006G077100 Species Populus trichocarpa Populus trichocarpa 31
Potri.018G147700 Species Populus trichocarpa Populus trichocarpa 32
Potri.T161600 Species Populus trichocarpa Populus trichocarpa 21
29462.m000385|29462.t000013 Species Ricinus communis Ricinus communis 11
YMR060C Species Saccharomyces cerevisiae Saccharomyces cerevisiae 1
403021 Species Selaginella moellendorffii Selaginella moellendorffii 2
405344 Species Selaginella moellendorffii Selaginella moellendorffii 31
422696 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400008514 Species Solanum tuberosum Solanum tuberosum 21
D8TKN0|tr Species Volvox carteri Volvox carteri 41
GSVIVG01010902001 Species Vitis vinifera Vitis vinifera 21
GRMZM2G005209 Species Zea mays Zea mays 41

Sequences (FASTA)