ARC Centre of Excellence for Plant Energy Biology

MPIC — PreP1,PreP2,CYM1 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
cTP 27
mTP 8

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

cTP predicted plus 1 other Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT1G49630|AtPrep2 Species Arabidopsis thaliana Arabidopsis thaliana
AT3G19170|AtPrep1 Species Arabidopsis thaliana Arabidopsis thaliana
Bra001738 Species Brassica rapa Brassica rapa cTPcTP
Bra018811 Species Brassica rapa Brassica rapa cTPmTP
Bra037536 Species Brassica rapa Brassica rapa cTPcTP
gi|71981120 Ce|Prep1 Species Caenorhabditis elegans Caenorhabditis elegans
CMM154CT Cm|CYM1 Species Cyanidioschyzon merolae Cyanidioschyzon merolae
CMQ222CT Cm|CYM1 Species Cyanidioschyzon merolae Cyanidioschyzon merolae
Cre01.g020900.t1.3 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii cTPcTP
Carubv10011558m.g Species Capsella rubella Capsella rubella cTPcTP
Carubv10012870m.g Species Capsella rubella Capsella rubella cTPmTP
Cucsa.219950.1 Species Cucumis sativus Cucumis sativus cTPcTP
gi|66803803 Species Dictyostelium discoideum Dictyostelium discoideum
gi|66806529 Species Dictyostelium discoideum Dictyostelium discoideum
gi|66824379 Species Dictyostelium discoideum Dictyostelium discoideum
Eucgr.G01465.1 Species Eucalyptus grandis Eucalyptus grandis cTPcTP
Esi0186_0008 Species Ectocarpus siliculosus Ectocarpus siliculosus
Esi0186_0009 Species Ectocarpus siliculosus Ectocarpus siliculosus
Glyma01g45650.2 Species Glycine max Glycine max cTPcTP
Glyma04g13640.1 Species Glycine max Glycine max
CYM1|gi|334085248 Hs Species Homo sapiens Homo sapiens
Medtr7g082690.1 Species Medicago truncatula Medicago truncatula
CYM1|gi|85099301 Nc Species Neurospora crassa Neurospora crassa
LOC_Os02g52390.1 Species Oryza sativa Oryza sativa mTP
Phpat.005G011400.1 Species Physcomitrella patens Physcomitrella patens cTPcTP
Potri.004G142300.1 Species Populus trichocarpa Populus trichocarpa cTPmTP
Potri.009G103700.1 Species Populus trichocarpa Populus trichocarpa cTPmTP
29801.m003206|29801.t000151 Species Ricinus communis Ricinus communis mTP
Cym1|Sc|YDR430C Species Saccharomyces cerevisiae Saccharomyces cerevisiae
152047 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400025820|PGSC0003DMT400066393 Species Solanum tuberosum Solanum tuberosum cTPmTP
Vocar20010196m.g Species Volvox carteri Volvox carteri cTP
GSVIVG01031766001|GSVIVT01031766001 Species Vitis vinifera Vitis vinifera cTPcTP
AC151525_26.1 Mt Species Zea mays Zea mays cTPcTP
GRMZM2G072861_T01 Species Zea mays Zea mays cTPmTP
GRMZM2G101271_T01 Species Zea mays Zea mays

Sequences (FASTA)