ARC Centre of Excellence for Plant Energy Biology

MPIC — PAM18 Transmembrane Helix Domain Predictions

Num_PredHel indicates the number of predicted transmembrane helix domains calculated by DAS and TMHMM predictors (for methods, see MPIC paper). A tally of both predictors is shown first.

Num_PredHel Frequency
1 27
2 2

1 predicted Species DAS_Num_PredHelTMHMM_Num_PredHel
AT2G35795 Species Arabidopsis thaliana Arabidopsis thaliana
AT3G09700 Species Arabidopsis thaliana Arabidopsis thaliana
AT5G03030 Species Arabidopsis thaliana Arabidopsis thaliana 1
Bra005744 Species Brassica rapa Brassica rapa 22
Bra009555 Species Brassica rapa Brassica rapa 1
Bra023030 Species Brassica rapa Brassica rapa 1
Bra028855 Species Brassica rapa Brassica rapa 11
Bra034080 Species Brassica rapa Brassica rapa
gi|17509089|NP_491662.1|ref Species Caenorhabditis elegans Caenorhabditis elegans 11
CMP334CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae
g9834.t1 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii
Carubv10002291m.g Species Capsella rubella Capsella rubella 1
Carubv10015707m.g Species Capsella rubella Capsella rubella 1
Carubv10024357m.g Species Capsella rubella Capsella rubella
Cucsa.065620.1 Species Cucumis sativus Cucumis sativus 1
Cucsa.308220.1 Species Cucumis sativus Cucumis sativus 1
gi|66810570|ref|XP_638992.1 Species Dictyostelium discoideum Dictyostelium discoideum 1
Eucgr.A01173.1 Species Eucalyptus grandis Eucalyptus grandis 11
Eucgr.G02806.1 Species Eucalyptus grandis Eucalyptus grandis 1
Eucgr.H00599.1 Species Eucalyptus grandis Eucalyptus grandis 1
Esi0159_0032|Mitochondrial import inner membrane translocase TIM14 homolog (210) ;mRNA; f:180550-183550 Species Ectocarpus siliculosus Ectocarpus siliculosus
Glyma05g16850.1 Species Glycine max Glycine max 1
Glyma10g05710.1 Species Glycine max Glycine max
Glyma13g20060.1 Species Glycine max Glycine max
Glyma17g23760.1 Species Glycine max Glycine max
gi|21687102|NP_660304.1|ref Species Homo sapiens Homo sapiens 11
I3T234_MEDTR Uncharacterized protein OS=Medicago truncatula PE=2 SV=1|tr Species Medicago truncatula Medicago truncatula
gi|85079621|hypothetical protein NCU00075 [Neurospora crassa OR74A]|ref|XP_956385.1 Species Neurospora crassa Neurospora crassa 11
LOC_Os01g06454.1 Species Oryza sativa Oryza sativa
LOC_Os03g56540.3 Species Oryza sativa Oryza sativa
LOC_Os07g09450.1 Species Oryza sativa Oryza sativa
Phpat.003G112600.1 Species Physcomitrella patens Physcomitrella patens
Potri.006G131200.1 Species Populus trichocarpa Populus trichocarpa
Potri.008G043500.1 Species Populus trichocarpa Populus trichocarpa 1
Potri.012G038800.1 Species Populus trichocarpa Populus trichocarpa
29740.m000482|29740.t000014 Species Ricinus communis Ricinus communis 1
YLR008C Species Saccharomyces cerevisiae Saccharomyces cerevisiae
420475 Species Selaginella moellendorffii Selaginella moellendorffii 1
PGSC0003DMG400001767|PGSC0003DMT400004431 Species Solanum tuberosum Solanum tuberosum
PGSC0003DMG400017591|PGSC0003DMT400045334 Species Solanum tuberosum Solanum tuberosum
PGSC0003DMG400027048|PGSC0003DMT400069578 Species Solanum tuberosum Solanum tuberosum 1
Vocar20006154m.g Species Volvox carteri Volvox carteri
GSVIVG01016322001|GSVIVT01016322001 Species Vitis vinifera Vitis vinifera
GSVIVG01025634001|GSVIVT01025634001 Species Vitis vinifera Vitis vinifera 1
GSVIVG01029410001|GSVIVT01029410001 Species Vitis vinifera Vitis vinifera
GRMZM2G029385_T01 Species Zea mays Zea mays
GRMZM2G038950_T02 Species Zea mays Zea mays 1
GRMZM2G040587_T01 Species Zea mays Zea mays

Sequences (FASTA)