ARC Centre of Excellence for Plant Energy Biology

MPIC — PAM18 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
mTP 83
cTP 36
SP 27
ER 7
Perox 1

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

mTP predicted plus 4 others Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT2G35795 Species Arabidopsis thaliana Arabidopsis thaliana mTPSPcTPmTP
AT3G09700 Species Arabidopsis thaliana Arabidopsis thaliana SP
AT5G03030 Species Arabidopsis thaliana Arabidopsis thaliana cTPmTPmTPcTPmTP
Bra005744 Species Brassica rapa Brassica rapa mTPSPSP
Bra009555 Species Brassica rapa Brassica rapa cTPmTPmTPmTPmTP
Bra023030 Species Brassica rapa Brassica rapa mTPSPERSP
Bra028855 Species Brassica rapa Brassica rapa mTPmTPcTPmTP
Bra034080 Species Brassica rapa Brassica rapa SP
gi|17509089|NP_491662.1|ref Species Caenorhabditis elegans Caenorhabditis elegans mTP
CMP334CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae mTPmTPER
g9834.t1 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii cTPSPcTPSP
Carubv10002291m.g Species Capsella rubella Capsella rubella cTPmTPmTPcTPmTP
Carubv10015707m.g Species Capsella rubella Capsella rubella cTPmTPSPmTP
Carubv10024357m.g Species Capsella rubella Capsella rubella mTPSPcTPmTP
Cucsa.065620.1 Species Cucumis sativus Cucumis sativus mTPmTPcTPmTP
Cucsa.308220.1 Species Cucumis sativus Cucumis sativus cTPmTPmTPcTPmTP
gi|66810570|ref|XP_638992.1 Species Dictyostelium discoideum Dictyostelium discoideum mTP
Eucgr.A01173.1 Species Eucalyptus grandis Eucalyptus grandis mTPSPERmTP
Eucgr.G02806.1 Species Eucalyptus grandis Eucalyptus grandis mTPSPmTP
Eucgr.H00599.1 Species Eucalyptus grandis Eucalyptus grandis mTPmTPcTP
Esi0159_0032|Mitochondrial import inner membrane translocase TIM14 homolog (210) ;mRNA; f:180550-183550 Species Ectocarpus siliculosus Ectocarpus siliculosus mTPmTPmTP
Glyma05g16850.1 Species Glycine max Glycine max cTPmTPSPcTPmTP
Glyma10g05710.1 Species Glycine max Glycine max mTPSPcTPmTP
Glyma13g20060.1 Species Glycine max Glycine max mTPSPcTPmTP
Glyma17g23760.1 Species Glycine max Glycine max cTPSPmTP
gi|21687102|NP_660304.1|ref Species Homo sapiens Homo sapiens mTP
I3T234_MEDTR Uncharacterized protein OS=Medicago truncatula PE=2 SV=1|tr Species Medicago truncatula Medicago truncatula mTP
gi|85079621|hypothetical protein NCU00075 [Neurospora crassa OR74A]|ref|XP_956385.1 Species Neurospora crassa Neurospora crassa mTPmTPER
LOC_Os01g06454.1 Species Oryza sativa Oryza sativa mTPSPERmTP
LOC_Os03g56540.3 Species Oryza sativa Oryza sativa mTPmTPmTPmTP
LOC_Os07g09450.1 Species Oryza sativa Oryza sativa mTPSPcTPmTP
Phpat.003G112600.1 Species Physcomitrella patens Physcomitrella patens cTPSPcTPSP
Potri.006G131200.1 Species Populus trichocarpa Populus trichocarpa cTPmTPmTPcTPmTP
Potri.008G043500.1 Species Populus trichocarpa Populus trichocarpa SPERmTP
Potri.012G038800.1 Species Populus trichocarpa Populus trichocarpa cTPmTPmTPcTPmTP
29740.m000482|29740.t000014 Species Ricinus communis Ricinus communis mTPmTP
YLR008C Species Saccharomyces cerevisiae Saccharomyces cerevisiae cTP
420475 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400001767|PGSC0003DMT400004431 Species Solanum tuberosum Solanum tuberosum cTPmTPSPmTP
PGSC0003DMG400017591|PGSC0003DMT400045334 Species Solanum tuberosum Solanum tuberosum cTPmTPmTPcTPmTP
PGSC0003DMG400027048|PGSC0003DMT400069578 Species Solanum tuberosum Solanum tuberosum mTPmTPcTPPeroxmTP
Vocar20006154m.g Species Volvox carteri Volvox carteri cTPSPcTPSP
GSVIVG01016322001|GSVIVT01016322001 Species Vitis vinifera Vitis vinifera
GSVIVG01025634001|GSVIVT01025634001 Species Vitis vinifera Vitis vinifera mTPmTPcTPmTP
GSVIVG01029410001|GSVIVT01029410001 Species Vitis vinifera Vitis vinifera
GRMZM2G029385_T01 Species Zea mays Zea mays
GRMZM2G038950_T02 Species Zea mays Zea mays mTPSPERmTP
GRMZM2G040587_T01 Species Zea mays Zea mays mTPSPcTPmTP

Sequences (FASTA)