MPIC - PAM16 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithmâ€™s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction	Frequency
mTP	66
SP	37
ER	11
cTP	10
Perox	1

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

mTP predicted plus 4 others	Species	ChloroP	MitoProt2	PProwler	Predotar	PTS1	TargetP
AT3G59280	Arabidopsis thaliana		mTP	mTP	ER		mTP
AT5G61880	Arabidopsis thaliana		mTP	mTP			SP
Bra003369	Brassica rapa			mTP		Perox
Bra007441	Brassica rapa		mTP	mTP	ER		mTP
Bra014546	Brassica rapa		mTP	mTP	ER		mTP
Bra019621	Brassica rapa			mTP			mTP
gi\|17553472	Caenorhabditis elegans			cTP	mTP
CMK200CT	Cyanidioschyzon merolae		mTP	cTP
CMP334CT	Cyanidioschyzon merolae		mTP	mTP	ER
A8J4S6_CHLRE\|tr	Chlamydomonas reinhardtii
Carubv10018261m.g	Capsella rubella		mTP	mTP	ER		mTP
Cucsa.181450.1	Cucumis sativus	cTP	mTP	SP			SP
Cucsa.197950.1	Cucumis sativus	cTP	mTP	SP	ER		SP
Eucgr.A00221.1	Eucalyptus grandis	cTP	mTP	SP			mTP
Eucgr.H00433.1	Eucalyptus grandis	cTP	mTP	SP			mTP
Eucgr.L00545.1	Eucalyptus grandis	cTP	mTP	SP			mTP
Esi0237_0006	Ectocarpus siliculosus		mTP	mTP
Glyma02g08820.2	Glycine max			SP			SP
Glyma06g20480.2	Glycine max	cTP	mTP	mTP			mTP
Glyma16g27940.1	Glycine max		mTP	SP			SP
gi\|27363461	Homo sapiens		mTP
Medtr1g098440.1	Medicago truncatula
Medtr4g116100.1	Medicago truncatula		mTP	SP			SP
gi\|85097602	Neurospora crassa		mTP	mTP	mTP
LOC_Os10g33910.1	Oryza sativa		mTP		ER		SP
Phpat.012G064600.1	Physcomitrella patens		mTP	mTP			mTP
Phpat.018G069100.1	Physcomitrella patens	cTP	mTP	SP			SP
Phpat.021G010400.1	Physcomitrella patens		mTP	SP			SP
Potri.012G108600.1	Populus trichocarpa		mTP	SP			mTP
Potri.014G151200.1	Populus trichocarpa		mTP	SP	ER		SP
Potri.015G106600.1	Populus trichocarpa			SP			mTP
29964.m000153\|29964.t000004	Ricinus communis			SP			SP
YJL104W	Saccharomyces cerevisiae		mTP
402411	Selaginella moellendorffii			SP			SP
76729	Selaginella moellendorffii						mTP
PGSC0003DMG400014859\|PGSC0003DMT400038494	Solanum tuberosum		mTP	mTP	mTP		mTP
PGSC0003DMG400025578\|PGSC0003DMT400065725	Solanum tuberosum	cTP	mTP	mTP			SP
PGSC0003DMG400029557\|PGSC0003DMT400075993	Solanum tuberosum		mTP	SP			SP
PGSC0003DMG400029559\|PGSC0003DMT400076009	Solanum tuberosum		mTP	SP	mTP		SP
D8TX81_VOLCA\|tr	Volvox carteri
GSVIVG01008650001\|GSVIVT01008650001	Vitis vinifera		mTP	SP	ER		SP
GSVIVG01013542001\|GSVIVT01013542001	Vitis vinifera			SP			SP
GRMZM2G048434_T07	Zea mays		mTP		ER		SP
GRMZM2G164475_T01	Zea mays		mTP	mTP	ER		mTP

Sequences (FASTA)

ARC Centre of Excellence for Plant Energy Biology

MPIC — PAM16 Targeting Predictions

Abbreviations