ARC Centre of Excellence for Plant Energy Biology

MPIC — PAM16 CDD Results

Sequences for all species were analysed by CDD (Marchler-Bauer et al. 2011) using default settings. *Columns are described in the CDD documentation.

Domains Genes
Pam16 superfamily 43
Pam16 3
DnaJ 1
PPR_2 superfamily 1
DnaJ superfamily 1
QueryHit typePSSM-IDFromToE-ValueBitscoreAccessionShort nameIncompleteSuperfamily
AT3G59280 Species Arabidopsis thalianasuperfamily25208811106.44419e-1874.2283cl18422Pam16 superfamily - -
AT5G61880 Species Arabidopsis thalianasuperfamily25208811022.7587e-1566.9095cl18422Pam16 superfamily - -
Bra003369 Species Brassica rapasuperfamily252088361461.79695e-1979.2359cl18422Pam16 superfamily - -
Bra007441 Species Brassica rapasuperfamily25208811086.24156e-2079.6211cl18422Pam16 superfamily - -
Bra014546 Species Brassica rapasuperfamily25208811043.15988e-1977.6951cl18422Pam16 superfamily - -
Bra019621 Species Brassica rapasuperfamily2520884095102.55873e-1469.9911cl18422Pam16 superfamily - -
gi|17553472 Species Caenorhabditis elegansspecific25208811357.9693e-50157.431pfam03656Pam16 - cl18422
gi|17553472 Species Caenorhabditis eleganssuperfamily25208811357.9693e-50157.431cl18422Pam16 superfamily - -
CMK200CT Species Cyanidioschyzon merolaesuperfamily25208811288.71681e-1566.1391cl18422Pam16 superfamily - -
CMP334CT Species Cyanidioschyzon merolaespecific99751581024.69228e-0845.6141cd06257DnaJ - cl02542
CMP334CT Species Cyanidioschyzon merolaesuperfamily261333581024.69228e-0845.6141cl02542DnaJ superfamily - -
A8J4S6_CHLRE|tr Species Chlamydomonas reinhardtiisuperfamily2520881291.72833e-0640.7159cl18422Pam16 superfamilyN -
Carubv10018261m.g Species Capsella rubellasuperfamily25208811041.37307e-1773.4579cl18422Pam16 superfamily - -
Cucsa.181450.1 Species Cucumis sativussuperfamily25208811041.79699e-1773.0727cl18422Pam16 superfamily - -
Cucsa.197950.1 Species Cucumis sativussuperfamily25208811042.14387e-1772.6875cl18422Pam16 superfamily - -
Eucgr.A00221.1 Species Eucalyptus grandissuperfamily25208811041.85363e-1773.0727cl18422Pam16 superfamily - -
Eucgr.H00433.1 Species Eucalyptus grandissuperfamily25208811042.0898e-1669.9911cl18422Pam16 superfamily - -
Eucgr.L00545.1 Species Eucalyptus grandissuperfamily25208811041.0386e-1670.7615cl18422Pam16 superfamily - -
Esi0237_0006 Species Ectocarpus siliculosussuperfamily25208871193.98671e-2183.8583cl18422Pam16 superfamily - -
Glyma02g08820.2 Species Glycine maxsuperfamily25208827942.07883e-1156.1239cl18422Pam16 superfamilyN -
Glyma06g20480.2 Species Glycine maxsuperfamily25208811041.773e-1978.4655cl18422Pam16 superfamily - -
Glyma16g27940.1 Species Glycine maxsuperfamily25208811046.32373e-1668.8355cl18422Pam16 superfamily - -
gi|27363461 Species Homo sapiensspecific25208811253.24121e-55170.913pfam03656Pam16 - cl18422
gi|27363461 Species Homo sapienssuperfamily25208811253.24121e-55170.913cl18422Pam16 superfamily - -
Medtr1g098440.1 Species Medicago truncatulasuperfamily25208816817.4379e-1051.1163cl18422Pam16 superfamilyN -
Medtr4g116100.1 Species Medicago truncatulasuperfamily2520881782.30127e-0643.7975cl18422Pam16 superfamilyC -
gi|85097602 Species Neurospora crassasuperfamily25208811281.01343e-31111.207cl18422Pam16 superfamily - -
LOC_Os10g33910.1 Species Oryza sativasuperfamily25208811032.5865e-1567.2947cl18422Pam16 superfamily - -
Phpat.012G064600.1 Species Physcomitrella patenssuperfamily25208811103.3861e-1772.3023cl18422Pam16 superfamily - -
Phpat.018G069100.1 Species Physcomitrella patenssuperfamily25208811181.07625e-1773.8431cl18422Pam16 superfamily - -
Phpat.021G010400.1 Species Physcomitrella patenssuperfamily25208811042.34869e-1567.2947cl18422Pam16 superfamily - -
Potri.012G108600.1 Species Populus trichocarpasuperfamily25208811117.35733e-1668.4503cl18422Pam16 superfamily - -
Potri.014G151200.1 Species Populus trichocarpasuperfamily25208811041.95226e-2081.5471cl18422Pam16 superfamily - -
Potri.015G106600.1 Species Populus trichocarpasuperfamily252088161261.35722e-1465.3687cl18422Pam16 superfamily - -
29964.m000153|29964.t000004 Species Ricinus communissuperfamily252088461196.32283e-1259.2055cl18422Pam16 superfamilyN -
YJL104W Species Saccharomyces cerevisiaespecific25208811282.01822e-60185.166pfam03656Pam16 - cl18422
YJL104W Species Saccharomyces cerevisiaesuperfamily25208811282.01822e-60185.166cl18422Pam16 superfamily - -
402411 Species Selaginella moellendorffiisuperfamily25208811044.60437e-1258.0499cl18422Pam16 superfamily - -
76729 Species Selaginella moellendorffiisuperfamily252088321291.11003e-1260.3611cl18422Pam16 superfamily - -
PGSC0003DMG400029559|PGSC0003DMT400076009 Species Solanum tuberosumsuperfamily25208811036.03001e-1463.0575cl18422Pam16 superfamily - -
PGSC0003DMG400029559|PGSC0003DMT400076009 Species Solanum tuberosumsuperfamily25208811038.57437e-1565.7539cl18422Pam16 superfamily - -
PGSC0003DMG400029559|PGSC0003DMT400076009 Species Solanum tuberosumsuperfamily252088291164.94064e-1361.5167cl18422Pam16 superfamilyC -
PGSC0003DMG400029559|PGSC0003DMT400076009 Species Solanum tuberosumsuperfamily252088141481.08512e-1054.9683cl18422Pam16 superfamily - -
D8TX81_VOLCA|tr Species Volvox carterisuperfamily25208811096.98964e-1669.2207cl18422Pam16 superfamily - -
GSVIVG01008650001|GSVIVT01008650001 Species Vitis viniferasuperfamily252088191137.98687e-1565.7539cl18422Pam16 superfamily - -
GSVIVG01013542001|GSVIVT01013542001 Species Vitis viniferasuperfamily2520881392413.93666e-1980.3915cl18422Pam16 superfamily - -
GSVIVG01013542001|GSVIVT01013542001 Species Vitis viniferasuperfamily26165822670.00053656336.6118cl03252PPR_2 superfamily - -
GRMZM2G048434_T07 Species Zea mayssuperfamily25208811138.16635e-1668.4503cl18422Pam16 superfamily - -
GRMZM2G164475_T01 Species Zea mayssuperfamily25208811032.13407e-1875.3839cl18422Pam16 superfamily - -

Sequences (FASTA)