ARC Centre of Excellence for Plant Energy Biology

MPIC — OXA1 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
mTP 212
cTP 127
SP 8

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

mTP predicted plus 2 others Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT1G24490 Species Arabidopsis thaliana Arabidopsis thaliana cTPmTPcTPcTPcTP
AT2G46470 Species Arabidopsis thaliana Arabidopsis thaliana mTPmTPmTPmTP
AT5G62050 Species Arabidopsis thaliana Arabidopsis thaliana mTPmTPmTPmTP
Bra000424 Species Brassica rapa Brassica rapa mTPmTPmTPmTP
Bra004536 Species Brassica rapa Brassica rapa cTPmTPmTPmTPmTP
Bra010053 Species Brassica rapa Brassica rapa mTP
Bra012507 Species Brassica rapa Brassica rapa cTPmTPcTPcTPcTP
Bra032799 Species Brassica rapa Brassica rapa cTPmTPcTPcTPcTP
Bra035669 Species Brassica rapa Brassica rapa cTPmTPcTPcTPcTP
Bra040305 Species Brassica rapa Brassica rapa mTPmTPmTPmTP
Bra040348 Species Brassica rapa Brassica rapa
Bra040623 Species Brassica rapa Brassica rapa mTPSPSP
gi|71980488 Species Caenorhabditis elegans Caenorhabditis elegans mTPmTPmTP
CMC118CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae mTPmTPmTP
CMT063CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae mTPcTPmTP
Cre06.g251900.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii SP
Cre16.g690200.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii mTPmTPmTPmTP
Cre17.g729800.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii cTPmTPcTPmTPcTP
Carubv10009320m.g Species Capsella rubella Capsella rubella cTPmTPcTPcTPcTP
Carubv10016975m.g Species Capsella rubella Capsella rubella cTPmTPmTPmTPmTP
Carubv10023172m.g Species Capsella rubella Capsella rubella cTPmTPcTPcTPcTP
Carubv10023251m.g Species Capsella rubella Capsella rubella mTPmTPmTPmTP
Carubv10026454m.g Species Capsella rubella Capsella rubella mTPmTPmTPmTP
Cucsa.107400.1 Species Cucumis sativus Cucumis sativus mTPmTPmTPmTP
Cucsa.213790.1 Species Cucumis sativus Cucumis sativus cTPmTPcTPcTPcTP
Cucsa.394650.1 Species Cucumis sativus Cucumis sativus cTPmTPcTPcTPcTP
gi|268637951 Species Dictyostelium discoideum Dictyostelium discoideum mTPmTPmTP
gi|66811452 Species Dictyostelium discoideum Dictyostelium discoideum mTPcTPmTP
Eucgr.B01387.1 Species Eucalyptus grandis Eucalyptus grandis cTPmTPmTPmTPmTP
Eucgr.B02380.1 Species Eucalyptus grandis Eucalyptus grandis cTPmTPcTPcTPcTP
Eucgr.B03237.1 Species Eucalyptus grandis Eucalyptus grandis cTPmTPcTPcTPcTP
Eucgr.E00058.1 Species Eucalyptus grandis Eucalyptus grandis mTPmTPmTPmTP
Eucgr.E00060.1 Species Eucalyptus grandis Eucalyptus grandis cTPmTPmTPmTP
Eucgr.E00860.1 Species Eucalyptus grandis Eucalyptus grandis mTPmTPmTPmTP
Esi0025_0161 Species Ectocarpus siliculosus Ectocarpus siliculosus mTPmTPmTP
Esi0028_0040 Species Ectocarpus siliculosus Ectocarpus siliculosus cTP
Alb3 homolog|Esi0099_0095 Species Ectocarpus siliculosus Ectocarpus siliculosus mTPcTP
Esi0170_0057 Species Ectocarpus siliculosus Ectocarpus siliculosus cTP
Alb3 homolog|Esi0227_0023 Species Ectocarpus siliculosus Ectocarpus siliculosus mTPSP
Glyma07g31320.1 Species Glycine max Glycine max mTPmTPmTPmTP
Glyma07g36311.1 Species Glycine max Glycine max mTPmTPmTPmTP
Glyma11g14960.1 Species Glycine max Glycine max cTPcTPcTP
Glyma11g37590.1 Species Glycine max Glycine max cTPmTPcTPcTPcTP
Glyma12g06920.1 Species Glycine max Glycine max cTPcTPcTPcTP
Glyma13g25140.2 Species Glycine max Glycine max cTPcTPcTPcTP
Glyma18g01540.1 Species Glycine max Glycine max cTPmTPcTPcTPcTP
Glyma18g47545.1 Species Glycine max Glycine max cTPmTPmTPmTPmTP
gi|223718097 Species Homo sapiens Homo sapiens mTPcTPmTP
gi|28395049 Species Homo sapiens Homo sapiens mTPcTPmTP
Medtr3g086250.1 Species Medicago truncatula Medicago truncatula cTPmTPcTPcTPcTP
Medtr7g036950.1 Species Medicago truncatula Medicago truncatula mTPmTPmTPmTP
gi|85104274 Species Neurospora crassa Neurospora crassa mTPmTPmTP
LOC_Os01g05800.1 Species Oryza sativa Oryza sativa cTPmTPmTPmTPmTP
LOC_Os03g02480.1 Species Oryza sativa Oryza sativa mTPmTPmTPmTP
LOC_Os03g62750.1 Species Oryza sativa Oryza sativa cTPmTPmTPcTPmTP
LOC_Os10g37690.1 Species Oryza sativa Oryza sativa mTPmTPmTPmTP
Phpat.003G132900.1 Species Physcomitrella patens Physcomitrella patens cTPmTPcTPcTPcTP
Phpat.008G051300.1 Species Physcomitrella patens Physcomitrella patens cTPmTPmTPmTPmTP
Phpat.010G066400.1 Species Physcomitrella patens Physcomitrella patens cTPmTPcTPcTPcTP
Phpat.011G106700.1 Species Physcomitrella patens Physcomitrella patens mTPmTPmTPmTP
Potri.001G091800.1 Species Populus trichocarpa Populus trichocarpa mTPmTPmTPmTP
Potri.001G237800.1 Species Populus trichocarpa Populus trichocarpa mTPcTPcTPmTP
Potri.003G139800.1 Species Populus trichocarpa Populus trichocarpa mTPmTPmTPmTP
Potri.006G073000.1 Species Populus trichocarpa Populus trichocarpa mTPmTPmTPmTP
Potri.008G182000.1 Species Populus trichocarpa Populus trichocarpa cTPmTPcTPcTPcTP
Potri.009G029100.1 Species Populus trichocarpa Populus trichocarpa cTPmTPcTPcTPmTP
Potri.010G051900.1 Species Populus trichocarpa Populus trichocarpa mTP
Potri.018G140100.1 Species Populus trichocarpa Populus trichocarpa mTPmTPmTPmTP
Potri.T145700.1 Species Populus trichocarpa Populus trichocarpa mTPmTPmTPmTP
29651.m000289|29651.t000009 Species Ricinus communis Ricinus communis mTPmTPmTPmTP
29876.m000246|29876.t000003 Species Ricinus communis Ricinus communis cTPmTPcTPcTPcTP
29929.m004771|29929.t000274 Species Ricinus communis Ricinus communis cTPmTPcTPcTPcTP
30128.m009019|30128.t000480 Species Ricinus communis Ricinus communis cTPmTPmTPmTPmTP
30190.m010832|30190.t000068 Species Ricinus communis Ricinus communis mTPmTPmTPmTP
YER154W Species Saccharomyces cerevisiae Saccharomyces cerevisiae mTPmTPmTP
12954 Species Selaginella moellendorffii Selaginella moellendorffii SP
73518 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400000401|PGSC0003DMT400001063 Species Solanum tuberosum Solanum tuberosum cTPmTPcTPcTPcTP
PGSC0003DMG400005839|PGSC0003DMT400014957 Species Solanum tuberosum Solanum tuberosum mTPmTPmTPmTP
PGSC0003DMG400010740|PGSC0003DMT400027902 Species Solanum tuberosum Solanum tuberosum cTPmTPcTPcTPcTP
Vocar20001462m.g Species Volvox carteri Volvox carteri mTPmTPmTPmTP
Vocar20003543m.g Species Volvox carteri Volvox carteri mTPmTPmTPmTP
Vocar20010438m.g Species Volvox carteri Volvox carteri cTPmTPcTPcTPcTP
GSVIVG01000594001|GSVIVT01000594001 Species Vitis vinifera Vitis vinifera cTPmTPcTPcTPcTP
GSVIVG01019145001|GSVIVT01019145001 Species Vitis vinifera Vitis vinifera mTPmTPmTP
GSVIVG01019529001|GSVIVT01019529001 Species Vitis vinifera Vitis vinifera mTPmTPmTPmTP
GSVIVG01024995001|GSVIVT01024995001 Species Vitis vinifera Vitis vinifera SP
GRMZM2G055880_T01 Species Zea mays Zea mays
GRMZM2G064804_T02 Species Zea mays Zea mays mTPmTPmTPmTP
GRMZM2G110063_T01 Species Zea mays Zea mays mTPmTP
GRMZM2G136854_T01 Species Zea mays Zea mays
GRMZM2G426200_T01 Species Zea mays Zea mays SPmTPSP
GRMZM5G839422_T01 Species Zea mays Zea mays cTPmTPcTPcTP

Sequences (FASTA)