MPIC
Sequences for Brassica rapa were analysed by InterPro (Zdobnov and Apweiler 2001) using default settings.
| Database | Detected | Description | Start | End | E-Value |
|---|---|---|---|---|---|
| InterPro | IPR001708 | Membrane insertase OXA1/ALB3/YidC: | |||
| PANTHER | PTHR12428 | 59 | 218 | 0.0 | |
| Pfam | PF02096 | 60Kd inner membrane protein | 64 | 179 | 8.5E-22 |
| InterPro | IPR002100 | Transcription factor, MADS-box: | |||
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 1.099999091E-12 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 1.099999091E-12 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 9 | 57 | 1.4E-14 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 59 | 0.0 |
| SMART | SM00432 | 1 | 58 | 6.599998525E-26 | |
| SUPERFAMILY | SSF55455 | 2 | 59 | 0.0 | |
| InterPro | No IPR | Unintegrated signatures: | |||
| Coils | Coil | 272 | 293 | - | |
| PANTHER | PTHR12428:SF16 | 59 | 218 | 0.0 | |
| Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 34 | - |
| Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 172 | 293 | - |
| Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 86 | 105 | - |
| Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 128 | 146 | - |
| Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 57 | 67 | - |
| Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 147 | 171 | - |
| Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 35 | 56 | - |
| Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 106 | 127 | - |
| Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 68 | 85 | - |
| TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 103 | 125 | - |
| TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 61 | 83 | - |
| TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 151 | 173 | - |
