ARC Centre of Excellence for Plant Energy Biology

MPIC — OOP,PRD1,OCT1,OCT1-1,OCT1-2 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
mTP 23
cTP 21
SP 5

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

mTP predicted plus 2 others Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT1G67690 Species Arabidopsis thaliana Arabidopsis thaliana
AT5G51540 Species Arabidopsis thaliana Arabidopsis thaliana
AT5G65620 Species Arabidopsis thaliana Arabidopsis thaliana cTPcTP
Bra004078 Species Brassica rapa Brassica rapa
Bra004244 Species Brassica rapa Brassica rapa
Bra006067 Species Brassica rapa Brassica rapa
Bra024401 Species Brassica rapa Brassica rapa
Bra028579 Species Brassica rapa Brassica rapa
Bra029169 Species Brassica rapa Brassica rapa
gi|32565901 Species Caenorhabditis elegans Caenorhabditis elegans
gi|71999758 Species Caenorhabditis elegans Caenorhabditis elegans
CMS132CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae
CMS446CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae
Cre02.g073400.t1.3 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii mTP
Cre13.g572900.t2.1 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii cTPmTP
Carubv10000350m.g Species Capsella rubella Capsella rubella
Carubv10019853m.g Species Capsella rubella Capsella rubella cTPmTP
Carubv10025914m.g Species Capsella rubella Capsella rubella cTPmTP
Carubv10025983m.g Species Capsella rubella Capsella rubella mTP
Cucsa.251510.1 Species Cucumis sativus Cucumis sativus
Cucsa.273340.1 Species Cucumis sativus Cucumis sativus SP
Cucsa.394790.1 Species Cucumis sativus Cucumis sativus mTP
gi|268637658 Species Dictyostelium discoideum Dictyostelium discoideum
gi|66801567 Species Dictyostelium discoideum Dictyostelium discoideum
Eucgr.B03454.1 Cs Species Eucalyptus grandis Eucalyptus grandis mTP
Eucgr.I00594.1 Species Eucalyptus grandis Eucalyptus grandis
Eucgr.I00597.1 Species Eucalyptus grandis Eucalyptus grandis
Eucgr.K00152.1 Species Eucalyptus grandis Eucalyptus grandis cTP
Eucgr.L02517.1 Species Eucalyptus grandis Eucalyptus grandis cTPmTP
Esi0023_0135 Species Ectocarpus siliculosus Ectocarpus siliculosus
Esi0033_0093 Species Ectocarpus siliculosus Ectocarpus siliculosus
Glyma01g02480.1 Species Glycine max Glycine max cTPmTP
Glyma04g13088.1 Species Glycine max Glycine max mTP
Glyma09g33490.1 Species Glycine max Glycine max cTPcTP
Glyma11g37410.2 Species Glycine max Glycine max SP
Glyma18g01380.1 Species Glycine max Glycine max
gi|14149738|NP_065777|ref Species Homo sapiens Homo sapiens
gi|4507491 Species Homo sapiens Homo sapiens
Medtr3g009160.1 Species Medicago truncatula Medicago truncatula mTP
Medtr3g086000.1 Species Medicago truncatula Medicago truncatula
Medtr5g030940.1 Species Medicago truncatula Medicago truncatula cTPcTP
gi|85107353 Species Neurospora crassa Neurospora crassa
gi|85111610 Species Neurospora crassa Neurospora crassa
LOC_Os01g67590.1 Species Oryza sativa Oryza sativa mTP
LOC_Os02g58340.1 Species Oryza sativa Oryza sativa cTPcTP
LOC_Os06g47210.1 Species Oryza sativa Oryza sativa cTPmTP
Phpat.016G041000.1 Species Physcomitrella patens Physcomitrella patens
Phpat.018G066900.1 Species Physcomitrella patens Physcomitrella patens
Phpat.019G060600.1 Species Physcomitrella patens Physcomitrella patens mTP
Potri.007G004600.1 Species Populus trichocarpa Populus trichocarpa
Potri.010G054500.1 Species Populus trichocarpa Populus trichocarpa
Potri.014G004600.1 Species Populus trichocarpa Populus trichocarpa SP
Potri.014G010100.1 Species Populus trichocarpa Populus trichocarpa
Potri.015G129300.1 Species Populus trichocarpa Populus trichocarpa mTP
28333.m000566|28333.t000012 Species Ricinus communis Ricinus communis cTPcTP
28658.m000032|28658.t000001 Species Ricinus communis Ricinus communis SP
29929.m004709|29929.t000212 Species Ricinus communis Ricinus communis mTP
30147.m014196|30147.t000467 Species Ricinus communis Ricinus communis mTP
30484.m000014|30484.t000001 Species Ricinus communis Ricinus communis mTP
YCL057W Species Saccharomyces cerevisiae Saccharomyces cerevisiae
Oct1|YKL134C Species Saccharomyces cerevisiae Saccharomyces cerevisiae
119899 Species Selaginella moellendorffii Selaginella moellendorffii
164651 Species Selaginella moellendorffii Selaginella moellendorffii
416778 Species Selaginella moellendorffii Selaginella moellendorffii mTP
439159 Species Selaginella moellendorffii Selaginella moellendorffii
85692 Species Selaginella moellendorffii Selaginella moellendorffii
97030 Species Selaginella moellendorffii Selaginella moellendorffii
97633 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400030613|PGSC0003DMT400078667 Species Solanum tuberosum Solanum tuberosum cTPmTP
M1C3Y6_SOLTU|tr Species Solanum tuberosum Solanum tuberosum
Vocar20008539m.g Species Volvox carteri Volvox carteri cTPmTP
Vocar20013694m.g Species Volvox carteri Volvox carteri
GSVIVG01003850001|GSVIVT01003850001 Species Vitis vinifera Vitis vinifera
GSVIVG01010319001|GSVIVT01010319001 Species Vitis vinifera Vitis vinifera SP
GSVIVG01018572001|GSVIVT01018572001 Species Vitis vinifera Vitis vinifera cTPmTP
GSVIVG01031425001|GSVIVT01031425001 Species Vitis vinifera Vitis vinifera
GRMZM2G133919_T01 Species Zea mays Zea mays cTPmTP
GRMZM2G450659_T01 Species Zea mays Zea mays

Sequences (FASTA)