ARC Centre of Excellence for Plant Energy Biology

MPIC — OM64 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
mTP 33
SP 16
cTP 8
ER 1
Perox 1

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

mTP predicted plus 4 others Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT5G09420 Species Arabidopsis thaliana Arabidopsis thaliana PeroxcTP
Bra001692 Species Brassica rapa Brassica rapa SP
Bra009383 Species Brassica rapa Brassica rapa
Bra018737 Species Brassica rapa Brassica rapa mTPmTPmTPmTP
g11560.t1 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii mTP
Carubv10000509m.g Species Capsella rubella Capsella rubella cTP
Carubv10013209m.g Species Capsella rubella Capsella rubella cTPmTPcTP
Cucsa.217970.1 Species Cucumis sativus Cucumis sativus mTP
Eucgr.I02661.1 Species Eucalyptus grandis Eucalyptus grandis mTPmTPmTP
Eucgr.K02274.1 Species Eucalyptus grandis Eucalyptus grandis mTPSPmTP
Esi_0082_0071 Species Ectocarpus siliculosus Ectocarpus siliculosus
Glyma05g24400.1 Species Glycine max Glycine max
Glyma05g33810.1 Species Glycine max Glycine max mTPSPmTP
Glyma08g05870.3 Species Glycine max Glycine max mTPSPmTP
Glyma08g19070.1 Species Glycine max Glycine max SPmTPSP
Glyma15g05920.1 Species Glycine max Glycine max cTPmTPSP
Medtr8g107280.1 Species Medicago truncatula Medicago truncatula mTPSP
LOC_Os02g51810.1 Species Oryza sativa Oryza sativa
LOC_Os03g50010.1 Species Oryza sativa Oryza sativa mTPSPmTP
Phpat.019G042800.1 Species Physcomitrella patens Physcomitrella patens mTPmTPERSP
Phpat.021G056500.1 Species Physcomitrella patens Physcomitrella patens mTPmTPSP
Potri.001G205300.1 Species Populus trichocarpa Populus trichocarpa SP
Potri.012G046900.1 Species Populus trichocarpa Populus trichocarpa mTPSPmTP
Potri.015G038600.1 Species Populus trichocarpa Populus trichocarpa mTPSPmTP
29651.m000292|29651.t000012 Species Ricinus communis Ricinus communis
29806.m000976|29806.t000047 Species Ricinus communis Ricinus communis
PGSC0003DMG400005752|PGSC0003DMT400014757 Species Solanum tuberosum Solanum tuberosum mTPSPmTP
D8TMG3_VOLCA|tr Species Volvox carteri Volvox carteri
GSVIVG01008433001|GSVIVT01008433001 Species Vitis vinifera Vitis vinifera mTPSPmTP
GSVIVG01038788001|GSVIVT01038788001 Species Vitis vinifera Vitis vinifera
GRMZM2G159542_T01 Species Zea mays Zea mays cTPcTPcTP

Sequences (FASTA)