MPIC
Sequences for Capsella rubella were analysed by InterPro (Zdobnov and Apweiler 2001) using default settings.
| Database | Detected | Description | Start | End | E-Value |
|---|---|---|---|---|---|
| InterPro | IPR000120 | Amidase: | |||
| PANTHER | PTHR11895 | 91 | 522 | 0.0 | |
| Pfam | PF01425 | Amidase | 95 | 481 | 2.4E-51 |
| InterPro | IPR001440 | Tetratricopeptide TPR1: | |||
| Pfam | PF00515 | Tetratricopeptide repeat | 582 | 615 | 1.2E-5 |
| InterPro | IPR011990 | Tetratricopeptide-like helical domain: | |||
| Gene3D | G3DSA:1.25.40.10 | 510 | 619 | 2.3E-34 | |
| InterPro | IPR013026 | Tetratricopeptide repeat-containing domain: | |||
| ProSiteProfiles | PS50293 | TPR repeat region circular profile. | 514 | 615 | 0.0 |
| InterPro | IPR019734 | Tetratricopeptide repeat: | |||
| ProSiteProfiles | PS50005 | TPR repeat profile. | 514 | 547 | 0.0 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 548 | 581 | 0.0 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 582 | 615 | 0.0 |
| SMART | SM00028 | Tetratricopeptide repeats | 548 | 581 | 1.60000065E-6 |
| SMART | SM00028 | Tetratricopeptide repeats | 514 | 547 | 2.100000373E-4 |
| SMART | SM00028 | Tetratricopeptide repeats | 582 | 615 | 3.099999459E-8 |
| InterPro | IPR023631 | Amidase signature domain: | |||
| Gene3D | G3DSA:3.90.1300.10 | 87 | 487 | 9.5E-74 | |
| SUPERFAMILY | SSF75304 | 98 | 484 | 0.0 | |
| InterPro | No IPR | Unintegrated signatures: | |||
| PANTHER | PTHR11895:SF39 | 91 | 522 | 0.0 | |
| Pfam | PF13414 | TPR repeat | 512 | 579 | 6.3E-19 |
| Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 47 | - |
| Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 66 | 629 | - |
| Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 48 | 65 | - |
| SUPERFAMILY | SSF48452 | 511 | 619 | 0.0 | |
| TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 47 | 64 | - |
