MPIC
Sequences for Capsella rubella were analysed by InterPro (Zdobnov and Apweiler 2001) using default settings.
| Database | Detected | Description | Start | End | E-Value |
|---|---|---|---|---|---|
| InterPro | IPR000120 | Amidase: | |||
| PANTHER | PTHR11895 | 1 | 497 | 0.0 | |
| Pfam | PF01425 | Amidase | 65 | 455 | 8.7E-57 |
| InterPro | IPR001440 | Tetratricopeptide TPR1: | |||
| Pfam | PF00515 | Tetratricopeptide repeat | 556 | 589 | 8.8E-4 |
| InterPro | IPR011990 | Tetratricopeptide-like helical domain: | |||
| Gene3D | G3DSA:1.25.40.10 | 486 | 593 | 8.599999999E-33 | |
| InterPro | IPR013026 | Tetratricopeptide repeat-containing domain: | |||
| ProSiteProfiles | PS50293 | TPR repeat region circular profile. | 488 | 589 | 0.0 |
| InterPro | IPR019734 | Tetratricopeptide repeat: | |||
| ProSiteProfiles | PS50005 | TPR repeat profile. | 556 | 589 | 0.0 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 488 | 521 | 0.0 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 522 | 555 | 0.0 |
| SMART | SM00028 | Tetratricopeptide repeats | 556 | 589 | 3.499998511E-6 |
| SMART | SM00028 | Tetratricopeptide repeats | 522 | 555 | 2.900000363E-7 |
| SMART | SM00028 | Tetratricopeptide repeats | 488 | 521 | 4.799997768E-5 |
| InterPro | IPR023631 | Amidase signature domain: | |||
| Gene3D | G3DSA:3.90.1300.10 | 50 | 458 | 1.5E-72 | |
| SUPERFAMILY | SSF75304 | 39 | 456 | 0.0 | |
| InterPro | No IPR | Unintegrated signatures: | |||
| PANTHER | PTHR11895:SF6 | 1 | 497 | 0.0 | |
| Pfam | PF13414 | TPR repeat | 488 | 552 | 1.1E-15 |
| Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 35 | 604 | - |
| Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 16 | - |
| Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 17 | 34 | - |
| SUPERFAMILY | SSF48452 | 485 | 596 | 0.0 | |
