MPIC
Sequences for Brassica rapa were analysed by InterPro (Zdobnov and Apweiler 2001) using default settings.
| Database | Detected | Description | Start | End | E-Value |
|---|---|---|---|---|---|
| InterPro | IPR000120 | Amidase: | |||
| PANTHER | PTHR11895 | 57 | 491 | 0.0 | |
| Pfam | PF01425 | Amidase | 63 | 450 | 7.7E-50 |
| InterPro | IPR001440 | Tetratricopeptide TPR1: | |||
| Pfam | PF00515 | Tetratricopeptide repeat | 553 | 585 | 1.8E-5 |
| InterPro | IPR011990 | Tetratricopeptide-like helical domain: | |||
| Gene3D | G3DSA:1.25.40.10 | 480 | 589 | 1.8E-36 | |
| InterPro | IPR013026 | Tetratricopeptide repeat-containing domain: | |||
| ProSiteProfiles | PS50293 | TPR repeat region circular profile. | 484 | 585 | 0.0 |
| InterPro | IPR019734 | Tetratricopeptide repeat: | |||
| ProSiteProfiles | PS50005 | TPR repeat profile. | 518 | 551 | 0.0 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 484 | 517 | 0.0 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 552 | 585 | 0.0 |
| SMART | SM00028 | Tetratricopeptide repeats | 518 | 551 | 2.900000363E-8 |
| SMART | SM00028 | Tetratricopeptide repeats | 552 | 585 | 6.300002546E-8 |
| SMART | SM00028 | Tetratricopeptide repeats | 484 | 517 | 3.19999899E-5 |
| InterPro | IPR023631 | Amidase signature domain: | |||
| Gene3D | G3DSA:3.90.1300.10 | 53 | 456 | 2.1E-77 | |
| SUPERFAMILY | SSF75304 | 63 | 453 | 0.0 | |
| InterPro | No IPR | Unintegrated signatures: | |||
| PANTHER | PTHR11895:SF39 | 57 | 491 | 0.0 | |
| Pfam | PF13414 | TPR repeat | 482 | 549 | 3.2E-20 |
| Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 31 | 601 | - |
| Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 11 | - |
| Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 30 | - |
| SUPERFAMILY | SSF48452 | 482 | 589 | 0.0 | |
| TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 13 | 30 | - |
