MPIC
Sequences for Brassica rapa were analysed by InterPro (Zdobnov and Apweiler 2001) using default settings.
| Database | Detected | Description | Start | End | E-Value |
|---|---|---|---|---|---|
| InterPro | IPR000120 | Amidase: | |||
| PANTHER | PTHR11895 | 50 | 483 | 0.0 | |
| Pfam | PF01425 | Amidase | 57 | 442 | 5.2E-50 |
| InterPro | IPR001440 | Tetratricopeptide TPR1: | |||
| Pfam | PF00515 | Tetratricopeptide repeat | 543 | 576 | 5.9E-4 |
| InterPro | IPR011990 | Tetratricopeptide-like helical domain: | |||
| Gene3D | G3DSA:1.25.40.10 | 471 | 581 | 2.3E-35 | |
| InterPro | IPR013026 | Tetratricopeptide repeat-containing domain: | |||
| ProSiteProfiles | PS50293 | TPR repeat region circular profile. | 475 | 576 | 0.0 |
| InterPro | IPR019734 | Tetratricopeptide repeat: | |||
| ProSiteProfiles | PS50005 | TPR repeat profile. | 543 | 576 | 0.0 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 509 | 542 | 0.0 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 475 | 508 | 0.0 |
| SMART | SM00028 | Tetratricopeptide repeats | 475 | 508 | 2.300000619E-4 |
| SMART | SM00028 | Tetratricopeptide repeats | 543 | 576 | 1.400000458E-7 |
| SMART | SM00028 | Tetratricopeptide repeats | 509 | 542 | 8.899998522E-7 |
| InterPro | IPR023631 | Amidase signature domain: | |||
| Gene3D | G3DSA:3.90.1300.10 | 46 | 448 | 4.8E-76 | |
| SUPERFAMILY | SSF75304 | 56 | 446 | 0.0 | |
| InterPro | No IPR | Unintegrated signatures: | |||
| PANTHER | PTHR11895:SF39 | 50 | 483 | 0.0 | |
| Pfam | PF13414 | TPR repeat | 473 | 540 | 1.3E-18 |
| Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 25 | 591 | - |
| Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 5 | - |
| Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 6 | 24 | - |
| SUPERFAMILY | SSF48452 | 474 | 585 | 0.0 | |
| TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 24 | - |
