ARC Centre of Excellence for Plant Energy Biology

MPIC — MPP-ALPHA1,MPP-ALPHA2,MPP-BETA,MAS1,MAS2 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
mTP 64
cTP 56

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

mTP predicted plus 1 other Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT1G51980 Species Arabidopsis thaliana Arabidopsis thaliana cTPmTP
AT3G02090 Species Arabidopsis thaliana Arabidopsis thaliana cTPmTP
AT3G16480 Species Arabidopsis thaliana Arabidopsis thaliana cTPmTP
Bra014305 Species Brassica rapa Brassica rapa cTPmTP
Bra018939 Species Brassica rapa Brassica rapa cTPmTP
Bra021477 Species Brassica rapa Brassica rapa mTP
Bra022162 Species Brassica rapa Brassica rapa cTPmTP
Bra030405 Species Brassica rapa Brassica rapa cTPmTP
Bra039151 Species Brassica rapa Brassica rapa cTPmTP
gi|17553678|NP_498202.1|ref Species Caenorhabditis elegans Caenorhabditis elegans
gi|453222763|MPP alpha|NP_490888.2|ref Species Caenorhabditis elegans Caenorhabditis elegans
gi|71999683|MPP B|NP_501576.2|ref Species Caenorhabditis elegans Caenorhabditis elegans
CMK260CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae
CMM104CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae
CMQ089CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae
Cre12.g509750.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii cTPmTP
Cre12.g523850.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii mTP
Cre17.g722800.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii cTPmTP
Carubv10000696m.g Species Capsella rubella Capsella rubella cTPmTP
Carubv10008921m.g Species Capsella rubella Capsella rubella cTPmTP
Carubv10013366m.g Species Capsella rubella Capsella rubella cTPmTP
Carubv10015621m.g Species Capsella rubella Capsella rubella cTPmTP
Cucsa.021700.1 Species Cucumis sativus Cucumis sativus cTPmTP
Cucsa.081570.1 Species Cucumis sativus Cucumis sativus cTPmTP
Cucsa.116810.1 Species Cucumis sativus Cucumis sativus cTPmTP
gi|111226358|mitochondrial processing peptidase beta subunit|ref|XP_001134518.1 Species Dictyostelium discoideum Dictyostelium discoideum
gi|111226878|MPP alpha|ref|XP_001134603.1 Species Dictyostelium discoideum Dictyostelium discoideum
gi|66803202|ref|XP_635444.1 Species Dictyostelium discoideum Dictyostelium discoideum
Eucgr.C03704.1 Species Eucalyptus grandis Eucalyptus grandis cTPmTP
Eucgr.F03085.1 Species Eucalyptus grandis Eucalyptus grandis cTPmTP
Eucgr.H00078.1 Species Eucalyptus grandis Eucalyptus grandis cTPmTP
Esi0011_0084|MPP beta Species Ectocarpus siliculosus Ectocarpus siliculosus
Esi0098_0070|MPP beta Species Ectocarpus siliculosus Ectocarpus siliculosus
Esi0111_0016|MPP alpha Species Ectocarpus siliculosus Ectocarpus siliculosus
Esi0268_0010|MPP alpha Species Ectocarpus siliculosus Ectocarpus siliculosus
Glyma05g36040.1 Species Glycine max Glycine max cTPmTP
Glyma07g01720.1 Species Glycine max Glycine max cTPmTP
Glyma08g03580.1 Species Glycine max Glycine max cTPmTP
Glyma08g21380.1 Species Glycine max Glycine max cTPmTP
Glyma08g46020.1 Species Glycine max Glycine max cTPmTP
Glyma13g43000.1 Species Glycine max Glycine max cTPmTP
Glyma14g13370.1 Species Glycine max Glycine max
Glyma15g02390.1 Species Glycine max Glycine max mTP
Glyma16g10360.1 Species Glycine max Glycine max cTPmTP
Glyma18g31550.3 Species Glycine max Glycine max cTPmTP
gi|24308013|NP_055975|ref Species Homo sapiens Homo sapiens
cytochrome b-c1 complex subunit 1|gi|46593007|NP_003356.2|ref Species Homo sapiens Homo sapiens
cytochrome b-c1 complex subunit 2,Hs|gi|50592988|NP_003357.2|ref Species Homo sapiens Homo sapiens
gi|94538354|MPP beta|NP_004270.2|ref Species Homo sapiens Homo sapiens
Medtr8g014660.1 Species Medicago truncatula Medicago truncatula cTPmTP
Medtr8g102230.1 Species Medicago truncatula Medicago truncatula cTPmTP
gi|85109350|MPP alpha|ref|XP_962874.1 Species Neurospora crassa Neurospora crassa
gi|85119638|MPP beta|ref|XP_965680.1 Species Neurospora crassa Neurospora crassa
LOC_Os01g09560.1 Species Oryza sativa Oryza sativa cTPmTP
LOC_Os01g51390.1 Species Oryza sativa Oryza sativa cTPmTP
LOC_Os01g53700.1 Species Oryza sativa Oryza sativa mTP
LOC_Os01g73550.1 Species Oryza sativa Oryza sativa mTP
LOC_Os03g11410.1 Species Oryza sativa Oryza sativa mTP
LOC_Os05g44916.1 Species Oryza sativa Oryza sativa cTPmTP
Phpat.003G045700.1 Species Physcomitrella patens Physcomitrella patens cTPmTP
Phpat.004G049300.1 Species Physcomitrella patens Physcomitrella patens cTPmTP
Phpat.011G047500.1 Species Physcomitrella patens Physcomitrella patens
Phpat.013G074200.1 Species Physcomitrella patens Physcomitrella patens cTPmTP
Phpat.016G072700.1 Species Physcomitrella patens Physcomitrella patens
Potri.001G191100.1 Species Populus trichocarpa Populus trichocarpa cTPmTP
Potri.004G118900.1 Species Populus trichocarpa Populus trichocarpa cTPmTP
Potri.008G193200.1 Species Populus trichocarpa Populus trichocarpa cTPmTP
Potri.010G036700.1 Species Populus trichocarpa Populus trichocarpa cTPmTP
Potri.017G092400.1 Species Populus trichocarpa Populus trichocarpa cTPmTP
28753.m000078|28753.t000003 Species Ricinus communis Ricinus communis
29630.m000808|29630.t000033 Species Ricinus communis Ricinus communis cTPmTP
29912.m005353|29912.t000079 Species Ricinus communis Ricinus communis cTPmTP
30146.m003490|30146.t000067 Species Ricinus communis Ricinus communis cTPmTP
34269.m000014|34269.t000001 Species Ricinus communis Ricinus communis
146300 Species Selaginella moellendorffii Selaginella moellendorffii
183257 Species Selaginella moellendorffii Selaginella moellendorffii
420946 Species Selaginella moellendorffii Selaginella moellendorffii
440930 Species Selaginella moellendorffii Selaginella moellendorffii
448827 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400000289|PGSC0003DMT400000784 Species Solanum tuberosum Solanum tuberosum cTPmTP
PGSC0003DMG400001355|PGSC0003DMT400003437 Species Solanum tuberosum Solanum tuberosum mTP
PGSC0003DMG400028380|PGSC0003DMT400072957 Species Solanum tuberosum Solanum tuberosum cTPmTP
Vocar20001024m.g Species Volvox carteri Volvox carteri cTPcTP
Vocar20001314m.g Species Volvox carteri Volvox carteri
Vocar20014031m.g Species Volvox carteri Volvox carteri mTP
GSVIVG01011510001|GSVIVT01011510001 Species Vitis vinifera Vitis vinifera
GSVIVG01012193001|GSVIVT01012193001 Species Vitis vinifera Vitis vinifera
GSVIVG01015273001|GSVIVT01015273001 Species Vitis vinifera Vitis vinifera cTPmTP
GSVIVG01016955001|GSVIVT01016955001 Species Vitis vinifera Vitis vinifera cTPmTP
GSVIVG01021441001|GSVIVT01021441001 Species Vitis vinifera Vitis vinifera
GRMZM2G005036_T01 Species Zea mays Zea mays cTPmTP
GRMZM2G007715_T01 Species Zea mays Zea mays
GRMZM2G068336_T01 Species Zea mays Zea mays
GRMZM2G083984_T01 Species Zea mays Zea mays
GRMZM2G091563_T01 Species Zea mays Zea mays mTP
GRMZM2G100511_T01 Species Zea mays Zea mays mTP
GRMZM2G103725_T01 Species Zea mays Zea mays cTPmTP
GRMZM2G118074_T01 Species Zea mays Zea mays cTP
GRMZM2G166646_T01 Species Zea mays Zea mays cTPmTP
GRMZM2G167767_T01 Species Zea mays Zea mays cTPmTP
GRMZM2G174137_T01 Species Zea mays Zea mays mTP
GRMZM2G324991_T03 Species Zea mays Zea mays
GRMZM5G827505_T01 Species Zea mays Zea mays cTPmTP

Sequences (FASTA)