MPIC
Putative and known regulatory elements within upstream regions of each gene were obtained from, and enable analysis of co-regulated genes sourced from, Athena: Arabidopsis thaliana a resource for rapid visualization and systematic analysis of Arabidopsis promoter sequences (O’Connor et al. 2005).
| Locus | Species | Motif | Pattern | Start | End | Sense | Sequence |
|---|---|---|---|---|---|---|---|
At1g51980  |
Arabidopsis thaliana | ARF binding site motif | TGTCTC | -500 | -495 | + | TGTCTC |
| At1g51980 |
Arabidopsis thaliana | ATHB6 binding site motif | CAATTATTA | -271 | -263 | + | CAATTATTA |
| At1g51980 |
Arabidopsis thaliana | BoxII promoter motif | GGTTAA | -526 | -521 | + | GGTTAA |
| At1g51980 |
Arabidopsis thaliana | BoxII promoter motif | GGTTAA | -878 | -873 | + | GGTTAA |
| At1g51980 |
Arabidopsis thaliana | CCA1 binding site motif | AAMAATCT | -243 | -236 | - | AGATTTTT |
| At1g51980 |
Arabidopsis thaliana | GAREAT | TAACAAR | -355 | -349 | + | TAACAAA |
| At1g51980 |
Arabidopsis thaliana | L1-box promoter motif | TAAATGYA | -736 | -729 | + | TAAATGTA |
| At1g51980 |
Arabidopsis thaliana | MYB1AT | WAACCA | -145 | -140 | + | AAACCA |
| At1g51980 |
Arabidopsis thaliana | MYB1AT | WAACCA | -330 | -325 | + | AAACCA |
| At1g51980 |
Arabidopsis thaliana | MYB1AT | WAACCA | -797 | -792 | + | AAACCA |
| At1g51980 |
Arabidopsis thaliana | SV40 core promoter motif | GTGGWWHG | -781 | -774 | + | GTGGTATG |
| At1g51980 |
Arabidopsis thaliana | T-box promoter motif | ACTTTG | -140 | -135 | + | ACTTTG |
| At1g51980 |
Arabidopsis thaliana | TATA-box Motif | TATAAA | -435 | -430 | + | TATAAA |
| At1g51980 |
Arabidopsis thaliana | TATA-box Motif | TATAAA | -437 | -432 | - | TTTATA |
| At1g51980 |
Arabidopsis thaliana | TATA-box Motif | TATAAA | -567 | -562 | + | TATAAA |
| At1g51980 |
Arabidopsis thaliana | TATA-box Motif | TATAAA | -569 | -564 | - | TTTATA |
| At1g51980 |
Arabidopsis thaliana | TATA-box Motif | TATAAA | -695 | -690 | + | TATAAA |
| At1g51980 |
Arabidopsis thaliana | TATA-box Motif | TATAAA | -701 | -696 | - | TTTATA |
| At1g51980 |
Arabidopsis thaliana | TATA-box Motif | TATAAA | -738 | -733 | + | TATAAA |
| At1g51980 |
Arabidopsis thaliana | TATA-box Motif | TATAAA | -745 | -740 | + | TATAAA |
| At1g51980 |
Arabidopsis thaliana | TATA-box Motif | TATAAA | -758 | -753 | + | TATAAA |
| At1g51980 |
Arabidopsis thaliana | TATA-box Motif | TATAAA | -801 | -796 | + | TATAAA |
| At3g02090 |
Arabidopsis thaliana | AtMYB2 BS in RD22 | CTAACCA | -164 | -158 | + | CTAACCA |
| At3g02090 |
Arabidopsis thaliana | BoxII promoter motif | GGTTAA | -30 | -25 | - | TTAACC |
| At3g02090 |
Arabidopsis thaliana | GAREAT | TAACAAR | -288 | -282 | + | TAACAAA |
| At3g02090 |
Arabidopsis thaliana | MYB1 binding site motif | MTCCWACC | -221 | -214 | + | ATCCAACC |
| At3g02090 |
Arabidopsis thaliana | MYB1AT | WAACCA | -163 | -158 | + | TAACCA |
| At3g02090 |
Arabidopsis thaliana | MYB1AT | WAACCA | -29 | -24 | + | TAACCA |
| At3g02090 |
Arabidopsis thaliana | TATA-box Motif | TATAAA | -41 | -36 | - | TTTATA |
| At3g02090 |
Arabidopsis thaliana | TELO-box promoter motif | AAACCCTAA | -253 | -245 | - | TTAGGGTTT |
| At3g02090 |
Arabidopsis thaliana | W-box promoter motif | TTGACY | -101 | -96 | + | TTGACT |
| At3g02090 |
Arabidopsis thaliana | W-box promoter motif | TTGACY | -230 | -225 | - | GGTCAA |
| At3g16480 |
Arabidopsis thaliana | ATHB2 binding site motif | TAATMATTA | -736 | -728 | - | TAATGATTA |
| At3g16480 |
Arabidopsis thaliana | BoxII promoter motif | GGTTAA | -886 | -881 | - | TTAACC |
| At3g16480 |
Arabidopsis thaliana | CARGCW8GAT | CWWWWWWWWG | -659 | -650 | + | CATTATTAAG |
| At3g16480 |
Arabidopsis thaliana | CARGCW8GAT | CWWWWWWWWG | -659 | -650 | - | CATTATTAAG |
| At3g16480 |
Arabidopsis thaliana | CARGCW8GAT | CWWWWWWWWG | -900 | -891 | + | CTTAAAATAG |
| At3g16480 |
Arabidopsis thaliana | CARGCW8GAT | CWWWWWWWWG | -900 | -891 | - | CTTAAAATAG |
| At3g16480 |
Arabidopsis thaliana | CARGCW8GAT | CWWWWWWWWG | -943 | -934 | + | CTTTAATTAG |
| At3g16480 |
Arabidopsis thaliana | CARGCW8GAT | CWWWWWWWWG | -943 | -934 | - | CTTTAATTAG |
| At3g16480 |
Arabidopsis thaliana | CARGCW8GAT | CWWWWWWWWG | -964 | -955 | + | CATTTTAATG |
| At3g16480 |
Arabidopsis thaliana | CARGCW8GAT | CWWWWWWWWG | -964 | -955 | - | CATTTTAATG |
| At3g16480 |
Arabidopsis thaliana | Gap-box Motif | CAAATGAA | -270 | -263 | - | TTCATTTG |
| At3g16480 |
Arabidopsis thaliana | Ibox promoter motif | GATAAG | -467 | -462 | - | CTTATC |
| At3g16480 |
Arabidopsis thaliana | MYB1AT | WAACCA | -885 | -880 | + | TAACCA |
| At3g16480 |
Arabidopsis thaliana | MYB1AT | WAACCA | -910 | -905 | - | TGGTTT |
| At3g16480 |
Arabidopsis thaliana | RAV1-B binding site motif | CACCTG | -598 | -593 | + | CACCTG |
