ARC Centre of Excellence for Plant Energy Biology

MPIC — MIO10 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
Perox 3
cTP 3
mTP 2
SP 1

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

Perox predicted plus 3 others Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT1G22520 Species Arabidopsis thaliana Arabidopsis thaliana Perox
AT1G72170 Species Arabidopsis thaliana Arabidopsis thaliana
Bra003890 Species Brassica rapa Brassica rapa
Bra012332 Species Brassica rapa Brassica rapa
Bra016083 Species Brassica rapa Brassica rapa Perox
Bra016376 Species Brassica rapa Brassica rapa
gi|17534317 Species Caenorhabditis elegans Caenorhabditis elegans cTP
M1V5W2_CYAME|tr Species Cyanidioschyzon merolae Cyanidioschyzon merolae
Cre12.g515150.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii
Carubv10010740 Species Capsella rubella Capsella rubella
D7FW43_ECTSI|tr Species Ectocarpus siliculosus Ectocarpus siliculosus
Glyma04g43561 Species Glycine max Glycine max
Glyma06g48350.1 Species Glycine max Glycine max
gi|323276670 Species Homo sapiens Homo sapiens mTPcTP
Medtr3g005050.1 Species Medicago truncatula Medicago truncatula
gi|85083518 Species Neurospora crassa Neurospora crassa cTP
Os03g0840900 Species Oryza sativa Oryza sativa
Pp1s15_130V6.1 Species Physcomitrella patens Physcomitrella patens
Potri.013G105700 Species Populus trichocarpa Populus trichocarpa
Potri.019G079100.1 Species Populus trichocarpa Populus trichocarpa mTP
B9S728_RICCO|tr Species Ricinus communis Ricinus communis
YCL057C-A Species Saccharomyces cerevisiae Saccharomyces cerevisiae Perox
59864 Species Selaginella moellendorffii Selaginella moellendorffii SP
69829 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMT400065885 Species Solanum tuberosum Solanum tuberosum
GSVIVT01015950001 Species Vitis vinifera Vitis vinifera
GSVIVT01026083001 Species Vitis vinifera Vitis vinifera
GRMZM2G025227_T01 Species Zea mays Zea mays
GRMZM2G704150_T03 Species Zea mays Zea mays

Sequences (FASTA)