ARC Centre of Excellence for Plant Energy Biology

MPIC — MIA40 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
Perox 12
cTP 11
mTP 7
Peroxisome 6

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

Perox predicted plus 3 others Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT5G23395 Species Arabidopsis thaliana Arabidopsis thaliana PeroxcTP
Bra009679 Species Brassica rapa Brassica rapa cTPPeroxisomePeroxcTP
NP_500804.1|Protein ZK616.2 Species Caenorhabditis elegans Caenorhabditis elegans
CMJ294CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae cTP
Cre|g2905.t1|synonym:g2905.t1 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii
Carubv10002124m.g Species Capsella rubella Capsella rubella cTPPeroxisomePeroxcTP
Cucsa.300060.1 Species Cucumis sativus Cucumis sativus cTPPeroxisomePerox
F4Q0B4_DICFS|tr Species Dictyostelium discoideum Dictyostelium discoideum
Eucgr.G02613.1 Species Eucalyptus grandis Eucalyptus grandis PeroxisomePerox
Glyma16g01010.1 Species Glycine max Glycine max
gi|21389469 Species Homo sapiens Homo sapiens mTPcTP
Medtr8g020800.1 Species Medicago truncatula Medicago truncatula cTPcTPPerox
gi|85092435 Species Neurospora crassa Neurospora crassa mTPmTPmTP
LOC_Os04g44550.1 Species Oryza sativa Oryza sativa PeroxisomePerox
Phpat.011G062800.1 Species Physcomitrella patens Physcomitrella patens
Potri.010G254600.1 Species Populus trichocarpa Populus trichocarpa PeroxisomePerox
30131.m007287|30131.t000438 Species Ricinus communis Ricinus communis
YKL195W Species Saccharomyces cerevisiae Saccharomyces cerevisiae mTPmTPmTP
PGSC0003DMG400025308|PGSC0003DMT400065108 Species Solanum tuberosum Solanum tuberosum Perox
Vca|Vocar20007539m.g Species Volvox carteri Volvox carteri
GSVIVG01034352001|GSVIVT01034352001 Species Vitis vinifera Vitis vinifera PeroxcTP
GRMZM2G113990_T01 Species Zea mays Zea mays Perox
GRMZM2G132301_T01 Species Zea mays Zea mays Perox

Sequences (FASTA)