ARC Centre of Excellence for Plant Energy Biology

MPIC — MGR2 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
mTP 9
cTP 4
SP 2
Perox 1

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

mTP predicted plus 3 others Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT3G07910.1 Species Arabidopsis thaliana Arabidopsis thaliana mTP
Bra001276 Species Brassica rapa Brassica rapa
Bra029687 Species Brassica rapa Brassica rapa
Bra040039 Species Brassica rapa Brassica rapa mTPmTP
gi|71986658 Species Caenorhabditis elegans Caenorhabditis elegans cTP
M1VG27_CYAME|tr Species Cyanidioschyzon merolae Cyanidioschyzon merolae
Cre01.g010500.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii SP
Carubv10015032m.g|Cru Species Capsella rubella Capsella rubella mTP
Q54M86|ROMO1_DICDI|sp Species Dictyostelium discoideum Dictyostelium discoideum Perox
Eucgr.J01186.1 Species Eucalyptus grandis Eucalyptus grandis
Glyma04g28760.2 Species Glycine max Glycine max mTP
Glyma08g41416.1 Species Glycine max Glycine max mTP
Glyma18g14801.1 Species Glycine max Glycine max mTP
gi|18152785 Species Homo sapiens Homo sapiens cTP
Medtr3g017440.1|Mtr Species Medicago truncatula Medicago truncatula mTP
gi|164428405 Species Neurospora crassa Neurospora crassa mTPcTP
A3C5Z4_ORYSJ|tr Species Oryza sativa Oryza sativa
Pp1s291_8V6.1|Ppa Species Physcomitrella patens Physcomitrella patens
Pp1s29_156V6.1|Ppa Species Physcomitrella patens Physcomitrella patens
A9RUH0_PHYPA|tr Species Physcomitrella patens Physcomitrella patens
Potri.001G277100.1|Ptr Species Populus trichocarpa Populus trichocarpa
Potri.003G197800.1|Ptr Species Populus trichocarpa Populus trichocarpa
Potri.009G071900.1|Ptr Species Populus trichocarpa Populus trichocarpa
YPL098C Species Saccharomyces cerevisiae Saccharomyces cerevisiae cTP
124520|Smo Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400031241|PGSC0003DMP400054444|PGSC0003DMT400080257|Stu Species Solanum tuberosum Solanum tuberosum
Vca|Vocar20009730m.g Species Volvox carteri Volvox carteri SP
GSVIVG01037255001|GSVIVT01037255001|Vvi Species Vitis vinifera Vitis vinifera
GRMZM2G031625_T01|Zma Species Zea mays Zea mays

Sequences (FASTA)