ARC Centre of Excellence for Plant Energy Biology

MPIC — MGE1 Athena Promoter Motif Predictions

Putative and known regulatory elements within upstream regions of each gene were obtained from, and enable analysis of co-regulated genes sourced from, Athena: Arabidopsis thaliana a resource for rapid visualization and systematic analysis of Arabidopsis promoter sequences (O’Connor et al. 2005).

Locus Species Motif Pattern Start End Sense Sequence
At5g17710 Species Arabidopsis thaliana Arabidopsis thaliana ARF binding site motifTGTCTC-273-268-GAGACA
At5g17710 Species Arabidopsis thaliana Arabidopsis thaliana ATHB2 binding site motifTAATMATTA-957-949+TAATAATTA
At5g17710 Species Arabidopsis thaliana Arabidopsis thaliana BoxII promoter motifGGTTAA-54-49+GGTTAA
At5g17710 Species Arabidopsis thaliana Arabidopsis thaliana GAREATTAACAAR-538-532+TAACAAA
At5g17710 Species Arabidopsis thaliana Arabidopsis thaliana Hexamer promoter motifCCGTCG-137-132-CGACGG
At5g17710 Species Arabidopsis thaliana Arabidopsis thaliana MYB2ATTAACTG-254-249-CAGTTA
At5g17710 Species Arabidopsis thaliana Arabidopsis thaliana MYB4 binding site motifAMCWAMC-734-728+AACAAAC
At5g17710 Species Arabidopsis thaliana Arabidopsis thaliana T-box promoter motifACTTTG-932-927+ACTTTG
At5g17710 Species Arabidopsis thaliana Arabidopsis thaliana TATA-box MotifTATAAA-183-178+TATAAA
At5g17710 Species Arabidopsis thaliana Arabidopsis thaliana W-box promoter motifTTGACY-644-639-AGTCAA
At5g17710 Species Arabidopsis thaliana Arabidopsis thaliana W-box promoter motifTTGACY-742-737+TTGACC

Sequences (FASTA)