ARC Centre of Excellence for Plant Energy Biology

MPIC — IMP1,IMP2 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
cTP 53
mTP 45
SP 18

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

cTP predicted plus 2 others Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT1G29960 Species Arabidopsis thaliana Arabidopsis thaliana
AT3G08980 Species Arabidopsis thaliana Arabidopsis thaliana
Bra006087 Species Brassica rapa Brassica rapa mTP
Bra008992 Species Brassica rapa Brassica rapa mTP
Bra009418 Species Brassica rapa Brassica rapa cTPmTP
Bra015061 Species Brassica rapa Brassica rapa cTPcTP
Bra015534 Species Brassica rapa Brassica rapa mTP
Bra021634 Species Brassica rapa Brassica rapa cTPmTP
Bra029738 Species Brassica rapa Brassica rapa
Bra030640 Species Brassica rapa Brassica rapa
Bra031542 Species Brassica rapa Brassica rapa mTP
Bra034045 Species Brassica rapa Brassica rapa
gi|17543654 Species Caenorhabditis elegans Caenorhabditis elegans
gi|71982173 Species Caenorhabditis elegans Caenorhabditis elegans
CMB077CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae
CMR326CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae
CMR333CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae
Cre01.g027100.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii mTP
g11585.t1 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii mTP
g8013.t1 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii cTPmTP
Carubv10009515m.g Species Capsella rubella Capsella rubella mTP
Carubv10010481m.g Species Capsella rubella Capsella rubella
Carubv10010481m.g|Carubv10010684m Species Capsella rubella Capsella rubella
Carubv10010493m.g Species Capsella rubella Capsella rubella mTP
Carubv10014271m.g Species Capsella rubella Capsella rubella cTPcTP
Carubv10015579m.g Species Capsella rubella Capsella rubella
Carubv10023541m.g Species Capsella rubella Capsella rubella mTP
Cucsa.047590.1 Species Cucumis sativus Cucumis sativus
Cucsa.123370.1 Species Cucumis sativus Cucumis sativus cTP
Cucsa.176310.1 Species Cucumis sativus Cucumis sativus cTPmTP
Cucsa.232550.1 Species Cucumis sativus Cucumis sativus cTPmTP
Cucsa.273860.1 Species Cucumis sativus Cucumis sativus SP
gi|66811204 Species Dictyostelium discoideum Dictyostelium discoideum
Eucgr.A00507.1 Species Eucalyptus grandis Eucalyptus grandis SP
Eucgr.C03817.1 Species Eucalyptus grandis Eucalyptus grandis cTPcTP
Eucgr.D00315.1 Species Eucalyptus grandis Eucalyptus grandis SP
Eucgr.F00038.1 Species Eucalyptus grandis Eucalyptus grandis
Eucgr.F02385.1 Species Eucalyptus grandis Eucalyptus grandis mTP
Eucgr.F03218.1 Species Eucalyptus grandis Eucalyptus grandis mTP
Eucgr.L03207.1 Species Eucalyptus grandis Eucalyptus grandis mTP
Esi0007_0117|Imp1 homolog, Inner Membrane Peptidase complex subunit 1 (186) ;mRNA; f:727509-728975 Species Ectocarpus siliculosus Ectocarpus siliculosus
conserved unknown protein (235) ;mRNA; f:754395-757618|Esi0009_0118 Species Ectocarpus siliculosus Ectocarpus siliculosus
Esi0324_0009|Imp2 homolog, Inner Membrane Peptidase complex subunit 2 (176) ;mRNA; r:30937-33866 Species Ectocarpus siliculosus Ectocarpus siliculosus
Glyma04g03840.5 Species Glycine max Glycine max cTPcTP
Glyma05g35480.1 Species Glycine max Glycine max cTPcTP
Glyma07g18060.1 Species Glycine max Glycine max cTPSP
Glyma08g04250.1 Species Glycine max Glycine max cTPcTP
Glyma13g25940.1 Species Glycine max Glycine max mTP
Glyma13g25981.1 Species Glycine max Glycine max
Glyma13g26010.1 Species Glycine max Glycine max mTP
Glyma13g26540.1 Species Glycine max Glycine max
Glyma13g33660.1 Species Glycine max Glycine max mTP
Glyma15g39140.1 Species Glycine max Glycine max
Glyma18g42910.1 Species Glycine max Glycine max cTPSP
gi|14211845 Species Homo sapiens Homo sapiens
gi|21450679 Species Homo sapiens Homo sapiens
Medtr2g059220.1 Species Medicago truncatula Medicago truncatula cTPmTP
Medtr3g100960.1 Species Medicago truncatula Medicago truncatula cTPcTP
Medtr5g007850.1 Species Medicago truncatula Medicago truncatula cTPmTP
Medtr8g039980.1 Species Medicago truncatula Medicago truncatula SP
Medtr8g039990.1 Species Medicago truncatula Medicago truncatula SP
Medtr8g040010.1 Species Medicago truncatula Medicago truncatula
Medtr8g040050.1 Species Medicago truncatula Medicago truncatula
Medtr8g103470.1 Species Medicago truncatula Medicago truncatula cTPcTP
LOC_Os02g16709.1 Species Oryza sativa Oryza sativa cTPcTP
LOC_Os03g05430.1 Species Oryza sativa Oryza sativa cTPmTP
LOC_Os03g55640.1 Species Oryza sativa Oryza sativa cTPmTP
LOC_Os04g08340.1 Species Oryza sativa Oryza sativa cTPmTP
LOC_Os09g28000.1 Species Oryza sativa Oryza sativa cTPmTP
LOC_Os11g40500.1 Species Oryza sativa Oryza sativa mTP
Phpat.009G097900.1 Species Physcomitrella patens Physcomitrella patens SP
Phpat.012G075300.1 Species Physcomitrella patens Physcomitrella patens SP
Phpat.020G038400.1 Species Physcomitrella patens Physcomitrella patens
Phpat.023G022200.1 Species Physcomitrella patens Physcomitrella patens cTPSP
Phpat.023G051200.1 Species Physcomitrella patens Physcomitrella patens cTP
Potri.001G380400.1 Species Populus trichocarpa Populus trichocarpa SP
Potri.005G092900.1 Species Populus trichocarpa Populus trichocarpa SP
Potri.006G157900.1 Species Populus trichocarpa Populus trichocarpa cTPcTP
Potri.006G160000.1 Species Populus trichocarpa Populus trichocarpa cTPcTP
Potri.007G071400.1 Species Populus trichocarpa Populus trichocarpa cTPmTP
Potri.014G036400.1 Species Populus trichocarpa Populus trichocarpa mTP
Potri.016G115100.1 Species Populus trichocarpa Populus trichocarpa cTPmTP
Potri.018G081800.1 Species Populus trichocarpa Populus trichocarpa cTPcTP
29693.m002044|29693.t000082 Species Ricinus communis Ricinus communis SP
29701.m000603|29701.t000024 Species Ricinus communis Ricinus communis cTPSP
29912.m005509|29912.t000235 Species Ricinus communis Ricinus communis cTP
30026.m001516|30026.t000080 Species Ricinus communis Ricinus communis SP
30170.m013939|30170.t000351 Species Ricinus communis Ricinus communis cTPmTP
YMR035W Species Saccharomyces cerevisiae Saccharomyces cerevisiae
YMR150C Species Saccharomyces cerevisiae Saccharomyces cerevisiae
121429 Species Selaginella moellendorffii Selaginella moellendorffii SP
18112 Species Selaginella moellendorffii Selaginella moellendorffii
272208 Species Selaginella moellendorffii Selaginella moellendorffii
47339 Species Selaginella moellendorffii Selaginella moellendorffii
58024 Species Selaginella moellendorffii Selaginella moellendorffii
85448 Species Selaginella moellendorffii Selaginella moellendorffii
86052 Species Selaginella moellendorffii Selaginella moellendorffii
91609 Species Selaginella moellendorffii Selaginella moellendorffii SP
PGSC0003DMG400000378|PGSC0003DMT400001021 Species Solanum tuberosum Solanum tuberosum cTPcTP
PGSC0003DMG400007080|PGSC0003DMT400018240 Species Solanum tuberosum Solanum tuberosum
PGSC0003DMG400008317|PGSC0003DMT400021433 Species Solanum tuberosum Solanum tuberosum
PGSC0003DMG401008489|PGSC0003DMT400021872 Species Solanum tuberosum Solanum tuberosum
PGSC0003DMG401011681|PGSC0003DMT400030498 Species Solanum tuberosum Solanum tuberosum cTPmTP
Vocar20005047m.g Species Volvox carteri Volvox carteri cTPmTP
Vocar20005591m.g Species Volvox carteri Volvox carteri cTPmTP
Vocar20008453m.g Species Volvox carteri Volvox carteri SP
GSVIVG01008821001|GSVIVT01008821001 Species Vitis vinifera Vitis vinifera mTP
GSVIVG01009580001|GSVIVT01009580001 Species Vitis vinifera Vitis vinifera
GSVIVG01014071001|GSVIVT01014071001 Species Vitis vinifera Vitis vinifera mTP
GSVIVG01015377001|GSVIVT01015377001 Species Vitis vinifera Vitis vinifera
GSVIVG01021415001|GSVIVT01021415001 Species Vitis vinifera Vitis vinifera mTP
GSVIVG01033968001|GSVIVT01033968001 Species Vitis vinifera Vitis vinifera mTP
GRMZM2G024865_T01 Species Zea mays Zea mays cTPmTP
GRMZM2G029141_T01 Species Zea mays Zea mays mTP
GRMZM2G039930_T02 Species Zea mays Zea mays cTPcTP
GRMZM2G042164_T01 Species Zea mays Zea mays
GRMZM2G066469_T01 Species Zea mays Zea mays mTP
GRMZM2G107798_T01 Species Zea mays Zea mays mTP
GRMZM2G114557_T03 Species Zea mays Zea mays mTP
GRMZM2G142938_T01 Species Zea mays Zea mays
GRMZM2G162274_T01 Species Zea mays Zea mays mTP
GRMZM5G800751_T03 Species Zea mays Zea mays mTP
GRMZM5G833660_T01 Species Zea mays Zea mays

Sequences (FASTA)