Computational targeting prediction programs were run en bloc for all included species using each algorithmâs default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).
| Prediction | Frequency |
|---|---|
| cTP | 26 |
| mTP | 7 |
cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway
| cTP predicted plus 1 other | Species | ChloroP | MitoProt2 | PProwler | Predotar | PTS1 | TargetP |
|---|---|---|---|---|---|---|---|
| AT1G03160|Ath |
Arabidopsis thaliana | cTP | cTP | ||||
| Bra030522 |
Brassica rapa | cTP | cTP | ||||
| gi|17538097|NP_495161.1|ref |
Caenorhabditis elegans | ||||||
| Cre14.g616600.t1.2 |
Chlamydomonas reinhardtii | cTP | mTP | ||||
| Carubv10008235m|Cru |
Capsella rubella | cTP | cTP | ||||
| Csa|Cucsa.184500 |
Cucumis sativus | cTP | mTP | ||||
| gi|66807039|ref|XP_637242.1 |
Dictyostelium discoideum | ||||||
| gi|66826855|ref|XP_646782.1Dd |
Dictyostelium discoideum | ||||||
| Egr|Eucgr.H01482.1 |
Eucalyptus grandis | ||||||
| Glyma02g16630|Gma |
Glycine max | cTP | cTP | ||||
| Glyma10g03190.1|Gma |
Glycine max | cTP | cTP | ||||
| gi|7662004 |
Homo sapiens | ||||||
| Medtr1g072270|Mtr |
Medicago truncatula | cTP | cTP | ||||
| gi|85081328 |
Neurospora crassa | ||||||
| LOC_Os05g32390|Osa |
Oryza sativa | cTP | mTP | ||||
| Pp1s181_13V6.1|Ppa |
Physcomitrella patens | cTP | cTP | ||||
| Pp1s288_36V6.1|Ppa |
Physcomitrella patens | cTP | |||||
| Potri.002G053300|Ptr |
Populus trichocarpa | cTP | mTP | ||||
| Potri.005G209200|Ptr |
Populus trichocarpa | cTP | mTP | ||||
| 29647.m002091|29647.t000099|Rco |
Ricinus communis | cTP | cTP | ||||
| YBR179C |
Saccharomyces cerevisiae | ||||||
| 413416|Smo |
Selaginella moellendorffii | cTP | cTP | ||||
| Vca|Vocar20014393m |
Volvox carteri | ||||||
| GSVIVG01011085001|Vvi |
Vitis vinifera | cTP | mTP | ||||
| GRMZM2G319109_T01|Zma |
Zea mays | cTP | mTP |