ARC Centre of Excellence for Plant Energy Biology

MPIC — ERV1 Transmembrane Helix Domain Predictions

Num_PredHel indicates the number of predicted transmembrane helix domains calculated by DAS and TMHMM predictors (for methods, see MPIC paper). A tally of both predictors is shown first.

Num_PredHel Frequency
1 2
2 1

1 predicted Species DAS_Num_PredHelTMHMM_Num_PredHel
AT1G49880 Species Arabidopsis thaliana Arabidopsis thaliana
Bra014223 Species Brassica rapa Brassica rapa
gi|17507677 Species Caenorhabditis elegans Caenorhabditis elegans
CMT484CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae 11
Cre03.g173200.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii
Cre14.g633000.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii 2
Carubv10010320m.g Species Capsella rubella Capsella rubella
Cucsa.097440.1 Species Cucumis sativus Cucumis sativus
gi|66823895 Species Dictyostelium discoideum Dictyostelium discoideum
Eucgr.G01264.1 Species Eucalyptus grandis Eucalyptus grandis
Esi0202_0015 Species Ectocarpus siliculosus Ectocarpus siliculosus
Glyma13g26970.1 Species Glycine max Glycine max
Glyma15g38020.3 Species Glycine max Glycine max
gi|54112432 Species Homo sapiens Homo sapiens
Medtr8g045480.1 Species Medicago truncatula Medicago truncatula
gi|85093549 Species Neurospora crassa Neurospora crassa
LOC_Os03g10850.1 Species Oryza sativa Oryza sativa
Phpat.002G149100.1 Species Physcomitrella patens Physcomitrella patens
Phpat.019G062000.1 Species Physcomitrella patens Physcomitrella patens
Potri.001G296000.1 Species Populus trichocarpa Populus trichocarpa
Potri.009G090200.1 Species Populus trichocarpa Populus trichocarpa
28152.m000901|28152.t000030 Species Ricinus communis Ricinus communis
YGR029W Species Saccharomyces cerevisiae Saccharomyces cerevisiae
105740 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400002983|PGSC0003DMT400007721 Species Solanum tuberosum Solanum tuberosum
Vocar20008072m.g Species Volvox carteri Volvox carteri
GSVIVG01037859001|GSVIVT01037859001 Species Vitis vinifera Vitis vinifera
GRMZM2G114234_T01 Species Zea mays Zea mays

Sequences (FASTA)