ARC Centre of Excellence for Plant Energy Biology

MPIC — ERV1 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
cTP 29
mTP 13

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

cTP predicted plus 1 other Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT1G49880 Species Arabidopsis thaliana Arabidopsis thaliana cTP
Bra014223 Species Brassica rapa Brassica rapa
gi|17507677 Species Caenorhabditis elegans Caenorhabditis elegans cTP
CMT484CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae mTPcTP
Cre03.g173200.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii cTPmTP
Cre14.g633000.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii
Carubv10010320m.g Species Capsella rubella Capsella rubella
Cucsa.097440.1 Species Cucumis sativus Cucumis sativus cTPmTPcTPcTP
gi|66823895 Species Dictyostelium discoideum Dictyostelium discoideum cTP
Eucgr.G01264.1 Species Eucalyptus grandis Eucalyptus grandis cTPcTPcTPcTP
Esi0202_0015 Species Ectocarpus siliculosus Ectocarpus siliculosus cTP
Glyma13g26970.1 Species Glycine max Glycine max cTP
Glyma15g38020.3 Species Glycine max Glycine max cTP
gi|54112432 Species Homo sapiens Homo sapiens cTP
Medtr8g045480.1 Species Medicago truncatula Medicago truncatula
gi|85093549 Species Neurospora crassa Neurospora crassa cTP
LOC_Os03g10850.1 Species Oryza sativa Oryza sativa mTPcTPmTP
Phpat.002G149100.1 Species Physcomitrella patens Physcomitrella patens
Phpat.019G062000.1 Species Physcomitrella patens Physcomitrella patens mTPmTPmTP
Potri.001G296000.1 Species Populus trichocarpa Populus trichocarpa cTPmTPmTP
Potri.009G090200.1 Species Populus trichocarpa Populus trichocarpa cTPmTPcTPcTP
28152.m000901|28152.t000030 Species Ricinus communis Ricinus communis cTPmTPcTP
YGR029W Species Saccharomyces cerevisiae Saccharomyces cerevisiae cTP
105740 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400002983|PGSC0003DMT400007721 Species Solanum tuberosum Solanum tuberosum
Vocar20008072m.g Species Volvox carteri Volvox carteri cTPcTP
GSVIVG01037859001|GSVIVT01037859001 Species Vitis vinifera Vitis vinifera cTP
GRMZM2G114234_T01 Species Zea mays Zea mays cTPmTP

Sequences (FASTA)