ARC Centre of Excellence for Plant Energy Biology

MPIC — B14.7 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
SP 1

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

SP predicted Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
At2g42210 Species Arabidopsis thaliana Arabidopsis thaliana
Bra004675 Species Brassica rapa Brassica rapa
Bra016890 Species Brassica rapa Brassica rapa
CMA128C Species Cyanidioschyzon merolae Cyanidioschyzon merolae
Carubv10024223m.g Species Capsella rubella Capsella rubella
Cucsa.242840.1 Species Cucumis sativus Cucumis sativus
Eucgr.A02439.1 Species Eucalyptus grandis Eucalyptus grandis
Glyma03g29880.3 Species Glycine max Glycine max
Glyma19g32780.1 Species Glycine max Glycine max
Medtr7g092890.3 Species Medicago truncatula Medicago truncatula
LOC_Os02g48610.1 Species Oryza sativa Oryza sativa
LOC_Os09g10740.1 Species Oryza sativa Oryza sativa
Phpat.005G082500.1 Species Physcomitrella patens Physcomitrella patens
Phpat.006G036500.1 Species Physcomitrella patens Physcomitrella patens
Potri.006G059300.1 Species Populus trichocarpa Populus trichocarpa
29269.m000246|29269.t000008 Species Ricinus communis Ricinus communis
D8RFR6_SELML|tr Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400011432|PGSC0003DMT400029746 Species Solanum tuberosum Solanum tuberosum
GSVIVG01033524001|GSVIVT01033524001 Species Vitis vinifera Vitis vinifera SP
GRMZM2G038375_T01 Species Zea mays Zea mays
GRMZM2G086935_T02 Species Zea mays Zea mays

Sequences (FASTA)