ARC Centre of Excellence for Plant Energy Biology

MPIC — B14.7 Athena Promoter Motif Predictions

Putative and known regulatory elements within upstream regions of each gene were obtained from, and enable analysis of co-regulated genes sourced from, Athena: Arabidopsis thaliana a resource for rapid visualization and systematic analysis of Arabidopsis promoter sequences (O’Connor et al. 2005).

Locus Species Motif Pattern Start End Sense Sequence
At2g42210 Species Arabidopsis thaliana Arabidopsis thaliana AtMYB2 BS in RD22CTAACCA-372-366+CTAACCA
At2g42210 Species Arabidopsis thaliana Arabidopsis thaliana AtMYC2 BS in RD22CACATG-75-70+CACATG
At2g42210 Species Arabidopsis thaliana Arabidopsis thaliana CARGCW8GATCWWWWWWWWG-99-90+CTATATAATG
At2g42210 Species Arabidopsis thaliana Arabidopsis thaliana CARGCW8GATCWWWWWWWWG-99-90-CTATATAATG
At2g42210 Species Arabidopsis thaliana Arabidopsis thaliana CCA1 binding site motifAAMAATCT-229-222+AAAAATCT
At2g42210 Species Arabidopsis thaliana Arabidopsis thaliana Gap-box MotifCAAATGAA-319-312+CAAATGAA
At2g42210 Species Arabidopsis thaliana Arabidopsis thaliana Ibox promoter motifGATAAG-240-235-CTTATC
At2g42210 Species Arabidopsis thaliana Arabidopsis thaliana MYB1ATWAACCA-371-366+TAACCA
At2g42210 Species Arabidopsis thaliana Arabidopsis thaliana MYCATERD1CATGTG-75-70-CACATG
At2g42210 Species Arabidopsis thaliana Arabidopsis thaliana SV40 core promoter motifGTGGWWHG-372-365-CTAACCAC
At2g42210 Species Arabidopsis thaliana Arabidopsis thaliana TATA-box MotifTATAAA-232-227+TATAAA
At2g42210 Species Arabidopsis thaliana Arabidopsis thaliana TATA-box MotifTATAAA-234-229-TTTATA
At2g42210 Species Arabidopsis thaliana Arabidopsis thaliana TELO-box promoter motifAAACCCTAA-377-369+AAACCCTAA
At2g42210 Species Arabidopsis thaliana Arabidopsis thaliana W-box promoter motifTTGACY-519-514-AGTCAA

Sequences (FASTA)