Computational targeting prediction programs were run en bloc for all included species using each algorithmâs default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).
Prediction | Frequency |
---|---|
cTP | 4 |
mTP | 1 |
cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway
cTP predicted plus 1 other | Species | ChloroP | MitoProt2 | PProwler | Predotar | PTS1 | TargetP |
---|---|---|---|---|---|---|---|
AT3G25120 | Arabidopsis thaliana | ||||||
Bra015100 | Brassica rapa | ||||||
Bra032686 | Brassica rapa | ||||||
Carubv10014714 | Capsella rubella | ||||||
Cucsa.077990 | Cucumis sativus | ||||||
Eucgr.K02137 | Eucalyptus grandis | cTP | |||||
Glyma17g16170 | Glycine max | cTP | cTP | ||||
Medtr8g012725.1 | Medicago truncatula | ||||||
LOC_Os04g30740 | Oryza sativa | ||||||
Phpat.022G050400 | Physcomitrella patens | ||||||
Potri.002G246000 | Populus trichocarpa | ||||||
30217.m000255|30217.t000006 | Ricinus communis | ||||||
426311 | Selaginella moellendorffii | ||||||
PGSC0003DMG400022033|PGSC0003DMT400056658 | Solanum tuberosum | ||||||
GSVIVG01003251001 | Vitis vinifera | cTP | |||||
GRMZM2G076351 | Zea mays | mTP |