Computational targeting prediction programs were run en bloc for all included species using each algorithmâs default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).
Prediction | Frequency |
---|---|
mTP | 4 |
cTP | 3 |
SP | 1 |
cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway
mTP predicted plus 2 others | Species | ChloroP | MitoProt2 | PProwler | Predotar | PTS1 | TargetP |
---|---|---|---|---|---|---|---|
AT3G49560 | Arabidopsis thaliana | ||||||
AT5G24650 | Arabidopsis thaliana | ||||||
Bra009782 | Brassica rapa | ||||||
Bra017976 | Brassica rapa | ||||||
Bra025133 | Brassica rapa | ||||||
Bra041064 | Brassica rapa | SP | |||||
Cre03.g183100.t1.2 | Chlamydomonas reinhardtii | ||||||
Carubv10001771m.g | Capsella rubella | ||||||
Carubv10017861m.g | Capsella rubella | ||||||
Cucsa.202450.1 | Cucumis sativus | ||||||
Eucgr.A00976.1 | Eucalyptus grandis | ||||||
Eucgr.K00480.1 | Eucalyptus grandis | ||||||
Eucgr.K00528.1 | Eucalyptus grandis | cTP | |||||
Glyma04g40360.1 | Glycine max | ||||||
Glyma06g14420.1 | Glycine max | ||||||
Medtr3g093380.1 | Medicago truncatula | ||||||
LOC_Os02g32530.1 | Oryza sativa | cTP | mTP | ||||
LOC_Os04g33220.1 | Oryza sativa | mTP | |||||
Phpat.016G075300.1 | Physcomitrella patens | ||||||
Phpat.025G026700.1 | Physcomitrella patens | ||||||
Potri.012G004600.1 | Populus trichocarpa | ||||||
Potri.015G000600.1 | Populus trichocarpa | ||||||
30154.m001133|30154.t000017 | Ricinus communis | ||||||
81847 | Selaginella moellendorffii | ||||||
PGSC0003DMG400000572|PGSC0003DMT400001542 | Solanum tuberosum | ||||||
Vocar20007903m.g | Volvox carteri | ||||||
GSVIVG01038683001|GSVIVT01038683001 | Vitis vinifera | cTP | mTP | ||||
GRMZM2G010743_T01 | Zea mays | ||||||
GRMZM2G089507_T01 | Zea mays | mTP | |||||
GRMZM2G473463_T01 | Zea mays |