ARC Centre of Excellence for Plant Energy Biology

MPIC — MgM1,MgM1A,MgM1B Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
cTP 34
mTP 1

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

cTP predicted plus 1 other Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT2G14120 Species Arabidopsis thaliana Arabidopsis thaliana
AT4G33650 Species Arabidopsis thaliana Arabidopsis thaliana
Bra011458 Species Brassica rapa Brassica rapa
Bra034579 Species Brassica rapa Brassica rapa cTP
Bra036991 Species Brassica rapa Brassica rapa
gi|193204309 Species Caenorhabditis elegans Caenorhabditis elegans
gi|71981891 Species Caenorhabditis elegans Caenorhabditis elegans
gi|71993833 Species Caenorhabditis elegans Caenorhabditis elegans
CME019CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae
Cre17.g724150.t1.1 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii
Carubv10004162m.g Species Capsella rubella Capsella rubella cTP
Carubv10013019m.g Species Capsella rubella Capsella rubella cTP
Cucsa.218420.1 Species Cucumis sativus Cucumis sativus cTPcTP
Cucsa.331870.1 Species Cucumis sativus Cucumis sativus cTPcTP
gi|66816205 Species Dictyostelium discoideum Dictyostelium discoideum
gi|66816950 Species Dictyostelium discoideum Dictyostelium discoideum
Eucgr.I02611.1 Species Eucalyptus grandis Eucalyptus grandis cTPcTP
Esi0021_0042 Species Ectocarpus siliculosus Ectocarpus siliculosus
Esi0024_0159 Species Ectocarpus siliculosus Ectocarpus siliculosus
Esi0029_0136 Species Ectocarpus siliculosus Ectocarpus siliculosus
Esi0103_0037 Species Ectocarpus siliculosus Ectocarpus siliculosus
Esi0343_0016 Species Ectocarpus siliculosus Ectocarpus siliculosus
Glyma04g16340.1 Species Glycine max Glycine max cTPcTP
Glyma07g30150.2 Species Glycine max Glycine max cTPcTP
Glyma08g07160.1 Species Glycine max Glycine max cTPcTP
Glyma13g32940.1 Species Glycine max Glycine max cTP
Glyma15g06380.1 Species Glycine max Glycine max cTPcTP
Glyma20g06670.1 Species Glycine max Glycine max
gi|11342664 Mx2 Species Homo sapiens Homo sapiens
gi|222136617 Mx1 Species Homo sapiens Homo sapiens
dynamin-2|gi|56549125|NP_001005362.1|ref Species Homo sapiens Homo sapiens
dynamin-1|gi|59853099|NP_004399.2|ref Species Homo sapiens Homo sapiens
Medtr2g009690.1 Species Medicago truncatula Medicago truncatula cTP
Medtr4g093750.1 Species Medicago truncatula Medicago truncatula cTP
gi|164424111 Species Neurospora crassa Neurospora crassa
gi|85092415 Species Neurospora crassa Neurospora crassa
gi|85099877 Species Neurospora crassa Neurospora crassa
gi|85111713 Species Neurospora crassa Neurospora crassa
gi|85115828 Species Neurospora crassa Neurospora crassa
LOC_Os01g69130.1 Species Oryza sativa Oryza sativa cTP
LOC_Os04g31190.1 Species Oryza sativa Oryza sativa
Phpat.008G087300.1 Species Physcomitrella patens Physcomitrella patens cTP
Phpat.020G019000.1 Species Physcomitrella patens Physcomitrella patens cTP
Phpat.023G005400.1 Species Physcomitrella patens Physcomitrella patens cTP
Phpat.023G066800.1 Species Physcomitrella patens Physcomitrella patens
Phpat.024G072600.1 Species Physcomitrella patens Physcomitrella patens cTP
Potri.007G118300.1 Species Populus trichocarpa Populus trichocarpa cTPcTP
Potri.012G125300.1 Species Populus trichocarpa Populus trichocarpa cTP
Potri.017G041800.1 Species Populus trichocarpa Populus trichocarpa cTPcTP
29506.m000169|29506.t000007 Species Ricinus communis Ricinus communis cTPcTP
29848.m004504|29848.t000060 Species Ricinus communis Ricinus communis
YOR211C Species Saccharomyces cerevisiae Saccharomyces cerevisiae
101670 Species Selaginella moellendorffii Selaginella moellendorffii
404911 Species Selaginella moellendorffii Selaginella moellendorffii
437242 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400010899 Species Solanum tuberosum Solanum tuberosum
Vocar20001129m.g Species Volvox carteri Volvox carteri
Vocar20015232m.g Species Volvox carteri Volvox carteri
GSVIVG01012532001|GSVIVT01012532001 Species Vitis vinifera Vitis vinifera mTP
GSVIVG01036006001|GSVIVT01036006001 Species Vitis vinifera Vitis vinifera
GRMZM2G129155_T01 Species Zea mays Zea mays cTP
GRMZM2G180335_T01 Species Zea mays Zea mays cTP

Sequences (FASTA)