ARC Centre of Excellence for Plant Energy Biology

MPIC — MgM1,MgM1A,MgM1B RNA Expression

RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).

Heatmap scale (natural logarithm) 2 7 12 Global expression heatmaps (Excel): Arabidopsis Rice
Arabidopsis RNA Transcript Expression  
Locus AT2G14120AT4G33650
Probe Set ID 263278_at253306_at
Developmental Expression Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root
No. of tissues expressed in 72 of 7373 of 73
Stress expression Control, Drought, Salt, Cold, HeatControl, Drought, Salt, Cold, Heat
flower 2 8.009777.70324
flower, stage 9 8.332047.60809
flower, stage 10/11 8.016557.45937
flower, stage 12 7.805487.67328
flower, stage 12, sepals 8.215638.21884
flower, stage 12, petals 8.543358.07082
flower, stage 12, stamens 8.025718.17755
flower, stage 12, carpels 8.357787.67180
flower, stage 15 8.103767.54319
flower, stage 15, pedicels 8.162857.98723
flower, stage 15, sepals 8.464728.39517
flower, stage 15, petals 8.682258.26902
flower, stage 15, stamen 8.480738.02421
flower, stage 15, carpels 8.371987.39362
mature pollen 7.883778.26485
cotyledon 8.018458.20417
silique, with seeds stage 3; mid globular to early heart embryo 7.670227.42410
silique, wth seeds stage 4; early to late heart embryo 7.672157.57713
silique, with seeds stage 5; late heart to mid torpedo embryo 7.687967.68384
seed, stage 6; mid to late torpedo embryos 7.548557.94715
seed, stage 7; late torpedo to early walking-stick embryo 7.624208.14579
seed, stage 8; walking-stick to early curled-cotyledons embryo 8.069328.65201
seed, stage 9; curled-cotyledons to early green-cotyledons embryo 8.391268.73416
seed, stage 10; green-cotyledons embryo 8.210028.98797
Germination - Harvested seed, collected before dessication 9.607079.57905
Germination - 0 h dry seed, 15d after collection 9.600149.58587
Germination - 1 h strat 10.3544010.02280
Germination - 12 h strat 9.927429.98923
Germination - 48 h strat 9.438739.87089
Germination - 1 h SL 9.324569.67384
Germination - 6 h SL 9.547319.56351
Germination - 12 h SL 9.436749.42152
Germination - 24 h SL 9.106568.96418
Germination - 48 h SL 8.703958.62760
hypocotyl 8.405147.66556
seedling, green parts 8.530528.57568
seedling, green parts 7.954077.99803
seedling, green parts 7.817497.91222
seedling, green parts 7.912708.11909
seedling, green parts 8.000757.94559
shoot apex, vegetative + young leaves 7.887087.95850
leaves 1 + 2 7.725038.38121
shoot apex, vegetative 8.181687.99088
shoot apex, transition (before bolting) 8.363197.77074
shoot apex, inflorescence (after bolting) 8.294177.78856
rosette leaf #4, 1 cm long 7.825518.49800
rosette leaf # 2 8.219778.11493
rosette leaf # 4 8.044548.00781
rosette leaf # 6 7.934777.97576
rosette leaf # 8 8.016198.07057
rosette leaf # 10 7.812317.86901
rosette leaf # 12 7.865397.99240
leaf 7, petiole 8.455918.00261
leaf 7, proximal half 8.139818.02651
leaf 7, distal half 8.214087.95705
developmental drift, entire rosette after transition to flowering, but before bolting 8.094547.85382
developmental drift, entire rosette after transition to flowering, but before bolting 8.073457.87338
developmental drift, entire rosette after transition to flowering, but before bolting 8.089977.99042
senescing leaf 8.657548.76262
cauline leaf 8.402917.94327
vegetative rosette 7.753188.29010
vegetative rosette 7.961328.06135
vegetative rosette 7.984818.10697
leaf 7.840648.10849
stem, 2nd internode 8.785067.80853
stem, 1st node 8.526237.44118
root 8.545308.08382
root 8.612568.08522
root 8.608108.18787
root 8.804917.97331
roots 8.926148.04286
root 8.717228.12105
root 8.562678.25493
Rice RNA Transcript Expression  
Locus LOC_Os01g69130.1LOC_Os04g31190.1
Probe Set ID Os.19079.1.S1_atOs.27352.1.S1_at
Developmental Expression Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, FlowerSeed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower
No. of tissues expressed in 41 of 4140 of 41
Stress expression Control (D,S,C), Drought, Salt, Cold, Control (H), HeatControl (D,S,C), Salt, Cold, Control (H), Heat
Young inflorescence (P1, upto 3 cm) 10.455708.58147
Inflorescence (P2, 3-5 cm) 10.194008.22470
Inflorescence (P3, 5-10 cm) 10.394438.28935
Inflorescence (P4, 10-15 cm) 10.109638.07399
Inflorescence (P5, 15-22 cm) 10.064837.91441
Inflorescence (P6, 22-30 cm) 9.842457.17504
Unpollenated stigma at antithesis 11.198468.39058
Ovary at antithesis 11.346899.20861
Embryo. 9.000628.19553
Endosperm. 9.504056.47991
Seed (S1, 0-2 days after pollenation) 9.230616.92273
Seed (S2, 3-4 days after pollenation) 9.347156.50546
Seed (S3, 5-10 days after pollenation) 9.021836.23678
Seed (S4, 11-20 days after pollenation) 8.794826.13417
Seed (S5, 21-29 days after pollenation) 8.987776.72899
Dry seed 10.304308.01413
1h seed (aerobic) 10.140917.49094
1h seed (anaerobic) 10.220327.66208
3h seed (aerobic) 9.996077.18442
3h seed (anaerobic) 9.783027.11539
12h seed (aerobic) 9.637648.18524
12h seed (anaerobic) 9.357468.32509
24h (aerobic) 9.573748.17159
24h seed (anaerobic) 9.201918.26720
27h (aerobic) 9.762868.31861
27h (anaerobic) 9.466808.61316
30h (aerobic) 9.712718.38188
30h (anaerobic) 9.431208.43953
27h (24h N + 3h A) 9.998608.57070
27h (24h A + 3h N) 9.572388.53564
30h (24h N + 6h A) 10.003278.62591
30h (24h A + 6h N) 9.406508.60591
Aerobic grown coleoptiles (4 days) 8.358895.30188
Anoxic grown coleoptiles (4 days) 8.213455.78849
10-day old seedling 9.702818.25794
Leaf from 7-day seedling 9.840788.23601
Mature leaf 10.000627.33338
Young Leaf 10.079567.74358
Semi Apical Meristem 10.482958.86761
Root from 7-day old seedling 10.116276.98416
Root from 7-day Seedling 9.847438.54766