Computational targeting prediction programs were run en bloc for all included species using each algorithmâs default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).
Prediction | Frequency |
---|---|
cTP | 110 |
mTP | 59 |
Perox | 2 |
SP | 1 |
cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway
cTP predicted plus 3 others | Species | ChloroP | MitoProt2 | PProwler | Predotar | PTS1 | TargetP |
---|---|---|---|---|---|---|---|
AT5G17710 | Arabidopsis thaliana | cTP | mTP | cTP | cTP | cTP | |
Bra002101 | Brassica rapa | cTP | mTP | cTP | cTP | cTP | |
Bra023634 | Brassica rapa | cTP | mTP | cTP | cTP | cTP | |
Bra036775 | Brassica rapa | ||||||
gi|17552458 | Caenorhabditis elegans | mTP | mTP | mTP | |||
CMT423CT | Cyanidioschyzon merolae | mTP | mTP | ||||
Cre07.g341600.t1.2 | Chlamydomonas reinhardtii | cTP | mTP | mTP | mTP | mTP | |
Carubv10001443m.g | Capsella rubella | cTP | mTP | cTP | cTP | cTP | |
Carubv10009969m.g | Capsella rubella | cTP | mTP | cTP | cTP | cTP | |
Cucsa.336010.1 | Cucumis sativus | cTP | mTP | cTP | cTP | cTP | |
Cucsa.381320.1 | Cucumis sativus | cTP | mTP | cTP | cTP | cTP | |
gi|66810377 | Dictyostelium discoideum | mTP | mTP | mTP | |||
Eucgr.F04384.1 | Eucalyptus grandis | cTP | mTP | cTP | cTP | cTP | |
Eucgr.K01549.1 | Eucalyptus grandis | cTP | mTP | cTP | cTP | cTP | |
Esi0000_0394 | Ectocarpus siliculosus | SP | |||||
Esi0074_0089 | Ectocarpus siliculosus | mTP | mTP | mTP | |||
Glyma03g00840.1 | Glycine max | cTP | mTP | cTP | cTP | cTP | |
Glyma06g11310.1 | Glycine max | cTP | mTP | cTP | cTP | cTP | |
Glyma19g29841.1 | Glycine max | cTP | mTP | cTP | cTP | cTP | |
gi|24308295 | Homo sapiens | mTP | mTP | mTP | |||
gi|40255109 | Homo sapiens | mTP | mTP | mTP | Perox | ||
Medtr3g073450.1 | Medicago truncatula | cTP | mTP | cTP | cTP | cTP | |
Medtr7g087250.1 | Medicago truncatula | cTP | mTP | cTP | cTP | cTP | |
gi|85082684 | Neurospora crassa | mTP | mTP | mTP | |||
LOC_Os02g39870.1 | Oryza sativa | cTP | mTP | cTP | cTP | cTP | |
LOC_Os04g35180.1 | Oryza sativa | mTP | mTP | mTP | mTP | ||
Phpat.004G013500.1 | Physcomitrella patens | cTP | mTP | cTP | cTP | cTP | |
Phpat.012G088500.1 | Physcomitrella patens | cTP | mTP | cTP | cTP | cTP | |
Potri.002G090000.1 | Populus trichocarpa | cTP | mTP | cTP | cTP | cTP | |
Potri.005G171200.1 | Populus trichocarpa | cTP | mTP | cTP | cTP | cTP | |
Potri.013G067900.1 | Populus trichocarpa | cTP | cTP | cTP | |||
29818.m000399|29818.t000011 | Ricinus communis | cTP | mTP | cTP | mTP | mTP | |
29908.m005954|29908.t000005 | Ricinus communis | cTP | cTP | cTP | cTP | ||
YOR232W | Saccharomyces cerevisiae | mTP | mTP | mTP | |||
71278 | Selaginella moellendorffii | ||||||
83859 | Selaginella moellendorffii | ||||||
PGSC0003DMG400028115|PGSC0003DMT400072243 | Solanum tuberosum | cTP | mTP | cTP | cTP | cTP | |
Vocar20006878m.g | Volvox carteri | ||||||
GSVIVG01008951001|GSVIVT01008951001 | Vitis vinifera | cTP | mTP | cTP | cTP | cTP | |
GSVIVG01029905001|GSVIVT01029905001 | Vitis vinifera | cTP | mTP | cTP | cTP | Perox | cTP |
GRMZM2G035948_T01 | Zea mays | cTP | mTP | cTP | cTP | cTP | |
GRMZM2G036590_T01 | Zea mays | cTP | mTP | cTP | cTP | cTP | |
GRMZM2G044684_T01 | Zea mays | cTP | mTP | cTP | cTP | cTP | |
GRMZM2G117632_T01 | Zea mays |