ARC Centre of Excellence for Plant Energy Biology

MPIC — MGE1 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
cTP 110
mTP 59
Perox 2
SP 1

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

cTP predicted plus 3 others Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT5G17710 Species Arabidopsis thaliana Arabidopsis thaliana cTPmTPcTPcTPcTP
Bra002101 Species Brassica rapa Brassica rapa cTPmTPcTPcTPcTP
Bra023634 Species Brassica rapa Brassica rapa cTPmTPcTPcTPcTP
Bra036775 Species Brassica rapa Brassica rapa
gi|17552458 Species Caenorhabditis elegans Caenorhabditis elegans mTPmTPmTP
CMT423CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae mTPmTP
Cre07.g341600.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii cTPmTPmTPmTPmTP
Carubv10001443m.g Species Capsella rubella Capsella rubella cTPmTPcTPcTPcTP
Carubv10009969m.g Species Capsella rubella Capsella rubella cTPmTPcTPcTPcTP
Cucsa.336010.1 Species Cucumis sativus Cucumis sativus cTPmTPcTPcTPcTP
Cucsa.381320.1 Species Cucumis sativus Cucumis sativus cTPmTPcTPcTPcTP
gi|66810377 Species Dictyostelium discoideum Dictyostelium discoideum mTPmTPmTP
Eucgr.F04384.1 Species Eucalyptus grandis Eucalyptus grandis cTPmTPcTPcTPcTP
Eucgr.K01549.1 Species Eucalyptus grandis Eucalyptus grandis cTPmTPcTPcTPcTP
Esi0000_0394 Species Ectocarpus siliculosus Ectocarpus siliculosus SP
Esi0074_0089 Species Ectocarpus siliculosus Ectocarpus siliculosus mTPmTPmTP
Glyma03g00840.1 Species Glycine max Glycine max cTPmTPcTPcTPcTP
Glyma06g11310.1 Species Glycine max Glycine max cTPmTPcTPcTPcTP
Glyma19g29841.1 Species Glycine max Glycine max cTPmTPcTPcTPcTP
gi|24308295 Species Homo sapiens Homo sapiens mTPmTPmTP
gi|40255109 Species Homo sapiens Homo sapiens mTPmTPmTPPerox
Medtr3g073450.1 Species Medicago truncatula Medicago truncatula cTPmTPcTPcTPcTP
Medtr7g087250.1 Species Medicago truncatula Medicago truncatula cTPmTPcTPcTPcTP
gi|85082684 Species Neurospora crassa Neurospora crassa mTPmTPmTP
LOC_Os02g39870.1 Species Oryza sativa Oryza sativa cTPmTPcTPcTPcTP
LOC_Os04g35180.1 Species Oryza sativa Oryza sativa mTPmTPmTPmTP
Phpat.004G013500.1 Species Physcomitrella patens Physcomitrella patens cTPmTPcTPcTPcTP
Phpat.012G088500.1 Species Physcomitrella patens Physcomitrella patens cTPmTPcTPcTPcTP
Potri.002G090000.1 Species Populus trichocarpa Populus trichocarpa cTPmTPcTPcTPcTP
Potri.005G171200.1 Species Populus trichocarpa Populus trichocarpa cTPmTPcTPcTPcTP
Potri.013G067900.1 Species Populus trichocarpa Populus trichocarpa cTPcTPcTP
29818.m000399|29818.t000011 Species Ricinus communis Ricinus communis cTPmTPcTPmTPmTP
29908.m005954|29908.t000005 Species Ricinus communis Ricinus communis cTPcTPcTPcTP
YOR232W Species Saccharomyces cerevisiae Saccharomyces cerevisiae mTPmTPmTP
71278 Species Selaginella moellendorffii Selaginella moellendorffii
83859 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400028115|PGSC0003DMT400072243 Species Solanum tuberosum Solanum tuberosum cTPmTPcTPcTPcTP
Vocar20006878m.g Species Volvox carteri Volvox carteri
GSVIVG01008951001|GSVIVT01008951001 Species Vitis vinifera Vitis vinifera cTPmTPcTPcTPcTP
GSVIVG01029905001|GSVIVT01029905001 Species Vitis vinifera Vitis vinifera cTPmTPcTPcTPPeroxcTP
GRMZM2G035948_T01 Species Zea mays Zea mays cTPmTPcTPcTPcTP
GRMZM2G036590_T01 Species Zea mays Zea mays cTPmTPcTPcTPcTP
GRMZM2G044684_T01 Species Zea mays Zea mays cTPmTPcTPcTPcTP
GRMZM2G117632_T01 Species Zea mays Zea mays

Sequences (FASTA)