Computational targeting prediction programs were run en bloc for all included species using each algorithmâs default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).
Prediction | Frequency |
---|---|
SP | 34 |
mTP | 3 |
cTP | 2 |
Perox | 2 |
cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway
SP predicted plus 3 others | Species | ChloroP | MitoProt2 | PProwler | Predotar | PTS1 | TargetP |
---|---|---|---|---|---|---|---|
AT1G15240 | Arabidopsis thaliana | SP | |||||
AT2G15900 | Arabidopsis thaliana | mTP | SP | ||||
Bra015246 | Brassica rapa | SP | |||||
Bra026152 | Brassica rapa | SP | |||||
Bra026776 | Brassica rapa | SP | |||||
gi|17506801|NP_492758.1|Protein SNX-27|ref | Caenorhabditis elegans | cTP | |||||
Carubv10008179m | Capsella rubella | SP | |||||
Carubv10012885m | Capsella rubella | SP | |||||
Carubv10012892m | Capsella rubella | SP | |||||
Csa|Cucsa.220190 | Cucumis sativus | SP | |||||
Csa|Cucsa.359160.1 | Cucumis sativus | SP | |||||
Egr|Eucgr.F03028 | Eucalyptus grandis | SP | |||||
Egr|Eucgr.G01512 | Eucalyptus grandis | ||||||
Glyma02g15445|Gma | Glycine max | SP | |||||
Glyma07g00690|Gma | Glycine max | ||||||
Glyma07g33040|Gma | Glycine max | SP | |||||
Glyma08g21950|Gma | Glycine max | ||||||
Glyma20g01140|Gma | Glycine max | SP | |||||
gi|17864088|NP_055947.1|ref|sorting nexin-13 [Homo sapiens] | Homo sapiens | SP | |||||
Medtr4g012920|Mtr | Medicago truncatula | SP | |||||
Medtr4g087210|Mtr | Medicago truncatula | SP | |||||
gi|164426626|ref|XP_957576.2 | Neurospora crassa | cTP | |||||
LOC_Os05g50660|Osa | Oryza sativa | ||||||
LOC_Os11g06040|Osa | Oryza sativa | mTP | SP | Perox | |||
Pp1s48_155V6.1|Ppa | Physcomitrella patens | SP | SP | ||||
Pp1s67_32V6.1|Ppa | Physcomitrella patens | SP | |||||
Pp1s68_34V6.1|Ppa | Physcomitrella patens | SP | mTP | ||||
Pp1s7_51V6.1|Ppa | Physcomitrella patens | SP | |||||
POPTR_0001s18360|Potri.001G183100|Ptr | Populus trichocarpa | SP | |||||
Potri.003G053200|Ptr | Populus trichocarpa | SP | |||||
Potri.004G146600|Ptr | Populus trichocarpa | SP | |||||
Potri.009G108300|Ptr | Populus trichocarpa | SP | |||||
29851.m002502|Rco | Ricinus communis | SP | |||||
30146.m003594|Rco | Ricinus communis | SP | |||||
YML104C | Saccharomyces cerevisiae | SP | |||||
413327|Smo | Selaginella moellendorffii | SP | |||||
GSVIVT01017080001|Vvi | Vitis vinifera | SP | |||||
GSVIVT01031845001|Vvi | Vitis vinifera | SP | |||||
GRMZM2G026442_T01|Zma | Zea mays | SP | Perox |